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Cluster: BackhedF_2015_ERR525908_bin.3_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_7 5142 5480 - 4.A.3.1.2
TF BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_8 5695 6699 - LacI
TC BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_9 7057 8832 + 4.A.3.1.1
CAZyme BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_10 8899 10338 + GH1
TF BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_11 10601 11638 - LacI
CAZyme BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_12 11980 13422 + GH1
TC BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_13 13599 15359 + 4.A.3.1.1
TF BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_14 15772 16782 - LacI
TC BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_15 17058 18836 + 4.A.3.1.1
CAZyme BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_16 18912 20333 + GH1
pfam BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_17 20702 21934 + Fic
STP BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_18 21983 22312 - DeoRC
TC BackhedF_2015_ERR525908_bin.3_k119_31515 BackhedF_2015_ERR525908_bin.3_k119_31515_19 22475 24169 - 4.A.3.1.1
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_7
Type: TC
Location: 5142 - 5480 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_8
Type: TF
Location: 5695 - 6699 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_9
Type: TC
Location: 7057 - 8832 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_10
Type: CAZyme
Location: 8899 - 10338 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_11
Type: TF
Location: 10601 - 11638 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_12
Type: CAZyme
Location: 11980 - 13422 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_13
Type: TC
Location: 13599 - 15359 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_14
Type: TF
Location: 15772 - 16782 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_15
Type: TC
Location: 17058 - 18836 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_16
Type: CAZyme
Location: 18912 - 20333 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_17
Type: pfam
Location: 20702 - 21934 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_18
Type: STP
Location: 21983 - 22312 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_31515_19
Type: TC
Location: 22475 - 24169 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BackhedF_2015_ERR525908_bin.3_k119_31515_11 vegetarian > omnivore 1.01939 0.01263

🧭 Explore Read Mapping of CGC

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