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Cluster: BackhedF_2015_ERR525908_bin.3_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_1 21 1190 - CE9
STP BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_2 1308 2474 - SIS | SIS
TF BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_3 2586 3320 - GntR
TC BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_4 3408 3836 - 4.A.6.1.8
NULL(UNKNOWN) BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_5 3918 4541 - NULL(UNKNOWN)
[View Structural Homologs]
TC BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_6 4730 5569 - 4.A.6.1.18
TC BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_7 5559 6446 - 4.A.6.1.18
TC BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_8 6540 7004 - 4.A.6.1.18
CAZyme BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_9 7007 8803 - GH35
pfam BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_10 9289 9762 - DUF386
CAZyme BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_11 9795 10964 - CE9
TF BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_12 11108 11839 - GntR
TC BackhedF_2015_ERR525908_bin.3_k119_25427 BackhedF_2015_ERR525908_bin.3_k119_25427_13 12072 13517 - 4.A.1.1.7
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_1
Type: CAZyme
Location: 21 - 1190 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_2
Type: STP
Location: 1308 - 2474 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_3
Type: TF
Location: 2586 - 3320 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_4
Type: TC
Location: 3408 - 3836 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_5
Type:
Location: 3918 - 4541 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_6
Type: TC
Location: 4730 - 5569 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_7
Type: TC
Location: 5559 - 6446 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_8
Type: TC
Location: 6540 - 7004 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_9
Type: CAZyme
Location: 7007 - 8803 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_10
Type: pfam
Location: 9289 - 9762 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_11
Type: CAZyme
Location: 9795 - 10964 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_12
Type: TF
Location: 11108 - 11839 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_25427_13
Type: TC
Location: 12072 - 13517 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BackhedF_2015_ERR525908_bin.3_k119_25427_6 vegetarian > vegan 2.49313 0.01560
BackhedF_2015_ERR525908_bin.3_k119_25427_8 vegetarian > vegan 3.34248 0.01560
BackhedF_2015_ERR525908_bin.3_k119_25427_9 vegetarian > vegan 2.73764 0.01560
BackhedF_2015_ERR525908_bin.3_k119_25427_12 vegetarian > vegan 3.38383 0.01560

🧭 Explore Read Mapping of CGC

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