Cluster: BackhedF_2015_ERR525908_bin.3_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525908_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_95 | 107343 | 108137 | - | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_96 | 108130 | 109053 | - | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_97 | 109257 | 110237 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_98 | 110398 | 111180 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_99 | 111439 | 112842 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_100 | 113024 | 113587 | - | 4.A.1.2.6 |
| peptidase | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_101 | 113831 | 114730 | + | S09.UPW |
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_102 | 115203 | 117563 | + | 9.A.8.1.6 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_103 | 117685 | 118881 | + | 2.A.1.2.18 |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_24760 | BackhedF_2015_ERR525908_bin.3_k119_24760_104 | 119036 | 120412 | + | GH13_20 |
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_95
Type: TC
Location: 107343 - 108137 (-)
Type: TC
Location: 107343 - 108137 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_96
Type: TC
Location: 108130 - 109053 (-)
Type: TC
Location: 108130 - 109053 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_97
Type: TC
Location: 109257 - 110237 (-)
Type: TC
Location: 109257 - 110237 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_98
Type:
Location: 110398 - 111180 (-)
Type:
Location: 110398 - 111180 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_99
Type: pfam
Location: 111439 - 112842 (-)
Type: pfam
Location: 111439 - 112842 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_100
Type: TC
Location: 113024 - 113587 (-)
Type: TC
Location: 113024 - 113587 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_101
Type: peptidase
Location: 113831 - 114730 (+)
Type: peptidase
Location: 113831 - 114730 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_102
Type: TC
Location: 115203 - 117563 (+)
Type: TC
Location: 115203 - 117563 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_103
Type: TC
Location: 117685 - 118881 (+)
Type: TC
Location: 117685 - 118881 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_24760_104
Type: CAZyme
Location: 119036 - 120412 (+)
Type: CAZyme
Location: 119036 - 120412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900755685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.