Cluster: BackhedF_2015_ERR525908_bin.3_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525908_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_3 | 1722 | 3602 | + | GT2 |
| pfam | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_4 | 3702 | 4889 | + | LicD |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_5 | 4922 | 6763 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_6 | 6795 | 7724 | - | GT81 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_7 | 7886 | 8731 | + | 3.A.1.103.6 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_22816 | BackhedF_2015_ERR525908_bin.3_k119_22816_8 | 8744 | 9511 | + | 3.A.1.103.1 |
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_3
Type: CAZyme
Location: 1722 - 3602 (+)
Type: CAZyme
Location: 1722 - 3602 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_4
Type: pfam
Location: 3702 - 4889 (+)
Type: pfam
Location: 3702 - 4889 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_5
Type: CAZyme
Location: 4922 - 6763 (+)
Type: CAZyme
Location: 4922 - 6763 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_6
Type: CAZyme
Location: 6795 - 7724 (-)
Type: CAZyme
Location: 6795 - 7724 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_7
Type: TC
Location: 7886 - 8731 (+)
Type: TC
Location: 7886 - 8731 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_22816_8
Type: TC
Location: 8744 - 9511 (+)
Type: TC
Location: 8744 - 9511 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900755685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525908_bin.3_k119_22816_3 | vegan > omnivore | 10.15986 | 0.01332 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_4 | vegan > omnivore | 17.30164 | 0.01332 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_5 | vegan > omnivore | 17.10141 | 0.01332 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_5 | vegetarian > omnivore | 12.30019 | 0.01263 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_6 | vegan > omnivore | 3.79036 | 0.01332 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_6 | vegetarian > omnivore | 2.01916 | 0.00763 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_7 | vegan > omnivore | 2.67314 | 0.01332 |
| BackhedF_2015_ERR525908_bin.3_k119_22816_7 | vegetarian > omnivore | 1.09665 | 0.01263 |