Cluster: BackhedF_2015_ERR525908_bin.3_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525908_bin.3
- CGC Family ID: CGCFAM_00049
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525908_bin.3_k119_17634 | BackhedF_2015_ERR525908_bin.3_k119_17634_14 | 19514 | 21394 | + | 9.B.18.2.1 |
| STP | BackhedF_2015_ERR525908_bin.3_k119_17634 | BackhedF_2015_ERR525908_bin.3_k119_17634_15 | 21410 | 22663 | + | Aminotran_1_2 |
| pfam | BackhedF_2015_ERR525908_bin.3_k119_17634 | BackhedF_2015_ERR525908_bin.3_k119_17634_16 | 23043 | 23372 | + | Bac_transf |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_17634 | BackhedF_2015_ERR525908_bin.3_k119_17634_17 | 23372 | 24157 | + | GT2 |
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_17634_14
Type: TC
Location: 19514 - 21394 (+)
Type: TC
Location: 19514 - 21394 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_17634_15
Type: STP
Location: 21410 - 22663 (+)
Type: STP
Location: 21410 - 22663 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_17634_16
Type: pfam
Location: 23043 - 23372 (+)
Type: pfam
Location: 23043 - 23372 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_17634_17
Type: CAZyme
Location: 23372 - 24157 (+)
Type: CAZyme
Location: 23372 - 24157 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900755685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.