Cluster: BackhedF_2015_ERR525865_bin.8_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525865_bin.8
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_8 | 16169 | 17386 | - | GT4 |
| pfam | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_9 | 17401 | 18165 | - | BcrAD_BadFG |
| pfam | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_10 | 18321 | 19484 | - | HGD-D |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_11 | 19561 | 20346 | - | 3.A.1.5.36 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_12 | 20336 | 21331 | - | 3.A.1.5.37 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_13 | 21335 | 22162 | - | 3.A.1.5.39 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_14 | 22162 | 23115 | - | 3.A.1.5.39 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_15 | 23204 | 24814 | - | 3.A.1.5.11 |
| pfam | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_16 | 24999 | 26282 | - | HGD-D |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_17 | 26687 | 27784 | - | 3.A.1.1.3 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_9490 | BackhedF_2015_ERR525865_bin.8_k119_9490_18 | 27788 | 29230 | - | 3.A.1.8.1 |
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_8
Type: CAZyme
Location: 16169 - 17386 (-)
Type: CAZyme
Location: 16169 - 17386 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_9
Type: pfam
Location: 17401 - 18165 (-)
Type: pfam
Location: 17401 - 18165 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_10
Type: pfam
Location: 18321 - 19484 (-)
Type: pfam
Location: 18321 - 19484 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_11
Type: TC
Location: 19561 - 20346 (-)
Type: TC
Location: 19561 - 20346 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_12
Type: TC
Location: 20336 - 21331 (-)
Type: TC
Location: 20336 - 21331 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_13
Type: TC
Location: 21335 - 22162 (-)
Type: TC
Location: 21335 - 22162 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_14
Type: TC
Location: 22162 - 23115 (-)
Type: TC
Location: 22162 - 23115 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_15
Type: TC
Location: 23204 - 24814 (-)
Type: TC
Location: 23204 - 24814 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_16
Type: pfam
Location: 24999 - 26282 (-)
Type: pfam
Location: 24999 - 26282 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_17
Type: TC
Location: 26687 - 27784 (-)
Type: TC
Location: 26687 - 27784 (-)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_9490_18
Type: TC
Location: 27788 - 29230 (-)
Type: TC
Location: 27788 - 29230 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525865_bin.8_k119_9490_8 | vegan > omnivore | 1.69552 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_11 | vegan > omnivore | 2.88423 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_12 | vegan > omnivore | 1.38772 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_13 | vegan > omnivore | 3.12542 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_13 | vegetarian > omnivore | 1.38250 | 0.02695 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_14 | vegan > omnivore | 2.89134 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_14 | vegetarian > omnivore | 1.25357 | 0.02695 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_15 | vegan > omnivore | 3.34448 | 0.00701 |
| BackhedF_2015_ERR525865_bin.8_k119_9490_15 | vegetarian > omnivore | 1.06610 | 0.02695 |