Cluster: BackhedF_2015_ERR525865_bin.8_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525865_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_25 | 24718 | 25161 | + | 4.A.6.1.16 |
| pfam | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_26 | 25161 | 25442 | + | YajC |
| TC | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_27 | 25479 | 25961 | + | 4.A.6.1.4 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_28 | 26052 | 26852 | + | 4.A.6.1.4 |
| TC | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_29 | 26842 | 27924 | + | 4.A.6.1.4 |
| TF | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_30 | 28109 | 28840 | + | GntR |
| STP | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_31 | 28955 | 30121 | + | SIS | SIS |
| CAZyme | BackhedF_2015_ERR525865_bin.8_k119_8066 | BackhedF_2015_ERR525865_bin.8_k119_8066_32 | 30239 | 31408 | + | CE9 |
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_25
Type: TC
Location: 24718 - 25161 (+)
Type: TC
Location: 24718 - 25161 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_26
Type: pfam
Location: 25161 - 25442 (+)
Type: pfam
Location: 25161 - 25442 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_27
Type: TC
Location: 25479 - 25961 (+)
Type: TC
Location: 25479 - 25961 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_28
Type: TC
Location: 26052 - 26852 (+)
Type: TC
Location: 26052 - 26852 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_29
Type: TC
Location: 26842 - 27924 (+)
Type: TC
Location: 26842 - 27924 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_30
Type: TF
Location: 28109 - 28840 (+)
Type: TF
Location: 28109 - 28840 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_31
Type: STP
Location: 28955 - 30121 (+)
Type: STP
Location: 28955 - 30121 (+)
Gene ID: BackhedF_2015_ERR525865_bin.8_k119_8066_32
Type: CAZyme
Location: 30239 - 31408 (+)
Type: CAZyme
Location: 30239 - 31408 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525865_bin.8_k119_8066_26 | vegan > omnivore | 1.10255 | 0.00701 |