Cluster: BackhedF_2015_ERR525721_bin.17_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525721_bin.17
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525721_bin.17_k119_1256 | BackhedF_2015_ERR525721_bin.17_k119_1256_2 | 1736 | 2248 | + | 4.A.1.2.2 |
| pfam | BackhedF_2015_ERR525721_bin.17_k119_1256 | BackhedF_2015_ERR525721_bin.17_k119_1256_3 | 2267 | 3121 | + | PRD | PRD | CAT_RBD |
| TC | BackhedF_2015_ERR525721_bin.17_k119_1256 | BackhedF_2015_ERR525721_bin.17_k119_1256_4 | 3221 | 4837 | + | 4.A.1.1.3 |
| CAZyme | BackhedF_2015_ERR525721_bin.17_k119_1256 | BackhedF_2015_ERR525721_bin.17_k119_1256_5 | 4841 | 6223 | + | GH4 |
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_1256_2
Type: TC
Location: 1736 - 2248 (+)
Type: TC
Location: 1736 - 2248 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_1256_3
Type: pfam
Location: 2267 - 3121 (+)
Type: pfam
Location: 2267 - 3121 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_1256_4
Type: TC
Location: 3221 - 4837 (+)
Type: TC
Location: 3221 - 4837 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_1256_5
Type: CAZyme
Location: 4841 - 6223 (+)
Type: CAZyme
Location: 4841 - 6223 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.