Cluster: BackhedF_2015_ERR525721_bin.17_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525721_bin.17
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_3 | 2399 | 4849 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_4 | 4871 | 4990 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_5 | 5074 | 5793 | + | GntR |
| TC | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_6 | 6100 | 7416 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_7 | 7504 | 8358 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_8 | 8358 | 9197 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_9 | 9266 | 10465 | + | 3.A.1.1.22 |
| CAZyme | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_10 | 11002 | 13269 | - | GT35 |
| CAZyme | BackhedF_2015_ERR525721_bin.17_k119_9238 | BackhedF_2015_ERR525721_bin.17_k119_9238_11 | 13398 | 14903 | - | GH77 |
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_3
Type: TC
Location: 2399 - 4849 (-)
Type: TC
Location: 2399 - 4849 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_4
Type:
Location: 4871 - 4990 (+)
Type:
Location: 4871 - 4990 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_5
Type: TF
Location: 5074 - 5793 (+)
Type: TF
Location: 5074 - 5793 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_6
Type: TC
Location: 6100 - 7416 (+)
Type: TC
Location: 6100 - 7416 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_7
Type: TC
Location: 7504 - 8358 (+)
Type: TC
Location: 7504 - 8358 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_8
Type: TC
Location: 8358 - 9197 (+)
Type: TC
Location: 8358 - 9197 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_9
Type: TC
Location: 9266 - 10465 (+)
Type: TC
Location: 9266 - 10465 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_10
Type: CAZyme
Location: 11002 - 13269 (-)
Type: CAZyme
Location: 11002 - 13269 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_9238_11
Type: CAZyme
Location: 13398 - 14903 (-)
Type: CAZyme
Location: 13398 - 14903 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.