Cluster: BackhedF_2015_ERR525721_bin.17_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525721_bin.17
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_26 | 26628 | 28004 | - | GH13_20 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_27 | 28154 | 29350 | - | 2.A.1.2.18 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_28 | 29472 | 31832 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_29 | 31954 | 32274 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_30 | 32322 | 33221 | - | S09.UPW |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_31 | 33468 | 34031 | + | 4.A.1.2.6 |
| pfam | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_32 | 34212 | 35615 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_33 | 35865 | 36650 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_34 | 36811 | 37791 | + | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_35 | 37996 | 38919 | + | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR525721_bin.17_k119_7812 | BackhedF_2015_ERR525721_bin.17_k119_7812_36 | 38912 | 39706 | + | 3.A.1.34.1 |
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_26
Type: CAZyme
Location: 26628 - 28004 (-)
Type: CAZyme
Location: 26628 - 28004 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_27
Type: TC
Location: 28154 - 29350 (-)
Type: TC
Location: 28154 - 29350 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_28
Type: TC
Location: 29472 - 31832 (-)
Type: TC
Location: 29472 - 31832 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_29
Type:
Location: 31954 - 32274 (-)
Type:
Location: 31954 - 32274 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_30
Type: peptidase
Location: 32322 - 33221 (-)
Type: peptidase
Location: 32322 - 33221 (-)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_31
Type: TC
Location: 33468 - 34031 (+)
Type: TC
Location: 33468 - 34031 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_32
Type: pfam
Location: 34212 - 35615 (+)
Type: pfam
Location: 34212 - 35615 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_33
Type:
Location: 35865 - 36650 (+)
Type:
Location: 35865 - 36650 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_34
Type: TC
Location: 36811 - 37791 (+)
Type: TC
Location: 36811 - 37791 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_35
Type: TC
Location: 37996 - 38919 (+)
Type: TC
Location: 37996 - 38919 (+)
Gene ID: BackhedF_2015_ERR525721_bin.17_k119_7812_36
Type: TC
Location: 38912 - 39706 (+)
Type: TC
Location: 38912 - 39706 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.