Cluster: BackhedF_2015_ERR525690_bin.1_CGC90
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_03466
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_1 | 362 | 6901 | + | CBM32 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_2 | 7162 | 7848 | + | Trans_reg_C |
| STP | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_3 | 7835 | 8824 | + | HATPase_c | HisKA |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_4 | 8940 | 9629 | + | 3.A.1.125.3 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_5 | 9626 | 12196 | + | FtsX | FtsX | MacB_PCD |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_6 | 12569 | 14329 | + | 8.A.59.2.1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_7 | 14522 | 15430 | + | 3.A.1.1.29 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_8 | 15446 | 16339 | + | 3.A.1.1.29 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_9 | 16401 | 17945 | + | SBP_bac_1 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_10 | 18036 | 19166 | + | GH88 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3264 | BackhedF_2015_ERR525690_bin.1_k119_3264_11 | 19194 | 20915 | + | GH154 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_1
Type: CAZyme
Location: 362 - 6901 (+)
Type: CAZyme
Location: 362 - 6901 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_2
Type: TF
Location: 7162 - 7848 (+)
Type: TF
Location: 7162 - 7848 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_3
Type: STP
Location: 7835 - 8824 (+)
Type: STP
Location: 7835 - 8824 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_4
Type: TC
Location: 8940 - 9629 (+)
Type: TC
Location: 8940 - 9629 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_5
Type: pfam
Location: 9626 - 12196 (+)
Type: pfam
Location: 9626 - 12196 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_6
Type: TC
Location: 12569 - 14329 (+)
Type: TC
Location: 12569 - 14329 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_7
Type: TC
Location: 14522 - 15430 (+)
Type: TC
Location: 14522 - 15430 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_8
Type: TC
Location: 15446 - 16339 (+)
Type: TC
Location: 15446 - 16339 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_9
Type: STP
Location: 16401 - 17945 (+)
Type: STP
Location: 16401 - 17945 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_10
Type: CAZyme
Location: 18036 - 19166 (+)
Type: CAZyme
Location: 18036 - 19166 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3264_11
Type: CAZyme
Location: 19194 - 20915 (+)
Type: CAZyme
Location: 19194 - 20915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.