Cluster: BackhedF_2015_ERR525690_bin.1_CGC80
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_04997
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_4 | 3194 | 10990 | - | GH136 | GH20 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_5 | 11470 | 13032 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_6 | 13204 | 15030 | - | 9.B.33.1.1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_7 | 15245 | 16084 | - | 3.A.1.1.28 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_8 | 16087 | 16968 | - | 3.A.1.1.28 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_9 | 16993 | 18291 | - | 3.A.1.1.44 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_10 | 18544 | 19194 | - | RloB |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_11 | 19197 | 20459 | - | AAA_15 | AAA_21 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_12 | 20706 | 22907 | - | 2.A.6.4.2 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_13 | 22971 | 23405 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_14 | 23694 | 25619 | - | GH127 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_15 | 25600 | 25821 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_16 | 25802 | 26635 | - | 3.A.1.1.41 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_17 | 26637 | 27542 | - | 3.A.1.1.19 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_18 | 27651 | 29012 | - | SBP_bac_1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_19 | 29149 | 30315 | - | 3.A.1.1.2 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_20 | 30356 | 31867 | - | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_21 | 31848 | 33689 | - | 8.A.59.2.1 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_22 | 33853 | 40863 | - | GH121 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_23 | 41330 | 41596 | - | Ribosomal_S18 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2910 | BackhedF_2015_ERR525690_bin.1_k119_2910_24 | 41663 | 42115 | - | 3.A.7.19.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_4
Type: CAZyme
Location: 3194 - 10990 (-)
Type: CAZyme
Location: 3194 - 10990 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_5
Type: TF
Location: 11470 - 13032 (-)
Type: TF
Location: 11470 - 13032 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_6
Type: TC
Location: 13204 - 15030 (-)
Type: TC
Location: 13204 - 15030 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_7
Type: TC
Location: 15245 - 16084 (-)
Type: TC
Location: 15245 - 16084 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_8
Type: TC
Location: 16087 - 16968 (-)
Type: TC
Location: 16087 - 16968 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_9
Type: TC
Location: 16993 - 18291 (-)
Type: TC
Location: 16993 - 18291 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_10
Type: pfam
Location: 18544 - 19194 (-)
Type: pfam
Location: 18544 - 19194 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_11
Type: pfam
Location: 19197 - 20459 (-)
Type: pfam
Location: 19197 - 20459 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_12
Type: TC
Location: 20706 - 22907 (-)
Type: TC
Location: 20706 - 22907 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_13
Type:
Location: 22971 - 23405 (-)
Type:
Location: 22971 - 23405 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_14
Type: CAZyme
Location: 23694 - 25619 (-)
Type: CAZyme
Location: 23694 - 25619 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_15
Type:
Location: 25600 - 25821 (-)
Type:
Location: 25600 - 25821 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_16
Type: TC
Location: 25802 - 26635 (-)
Type: TC
Location: 25802 - 26635 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_17
Type: TC
Location: 26637 - 27542 (-)
Type: TC
Location: 26637 - 27542 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_18
Type: STP
Location: 27651 - 29012 (-)
Type: STP
Location: 27651 - 29012 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_19
Type: TC
Location: 29149 - 30315 (-)
Type: TC
Location: 29149 - 30315 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_20
Type: TF
Location: 30356 - 31867 (-)
Type: TF
Location: 30356 - 31867 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_21
Type: TC
Location: 31848 - 33689 (-)
Type: TC
Location: 31848 - 33689 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_22
Type: CAZyme
Location: 33853 - 40863 (-)
Type: CAZyme
Location: 33853 - 40863 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_23
Type: pfam
Location: 41330 - 41596 (-)
Type: pfam
Location: 41330 - 41596 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2910_24
Type: TC
Location: 41663 - 42115 (-)
Type: TC
Location: 41663 - 42115 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.