Cluster: BackhedF_2015_ERR525690_bin.1_CGC77
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_00887
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_40 | 61749 | 66374 | - | CBM32 | GH95 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_41 | 66437 | 68623 | - | GH36 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_42 | 68626 | 69450 | - | 3.A.1.1.42 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_43 | 69452 | 70321 | - | 3.A.1.1.7 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_44 | 70408 | 71820 | - | SBP_bac_1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_45 | 72014 | 73840 | + | 8.A.59.2.1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_46 | 73827 | 75359 | + | HTH_AraC | HTH_AraC |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_47 | 75507 | 79502 | - | GH95 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_48 | 79649 | 81472 | - | fn3 | FIVAR | FIVAR | FIVAR | FIVAR |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2829 | BackhedF_2015_ERR525690_bin.1_k119_2829_49 | 81725 | 85696 | - | CBM32 | GH95 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_40
Type: CAZyme
Location: 61749 - 66374 (-)
Type: CAZyme
Location: 61749 - 66374 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_41
Type: CAZyme
Location: 66437 - 68623 (-)
Type: CAZyme
Location: 66437 - 68623 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_42
Type: TC
Location: 68626 - 69450 (-)
Type: TC
Location: 68626 - 69450 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_43
Type: TC
Location: 69452 - 70321 (-)
Type: TC
Location: 69452 - 70321 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_44
Type: STP
Location: 70408 - 71820 (-)
Type: STP
Location: 70408 - 71820 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_45
Type: TC
Location: 72014 - 73840 (+)
Type: TC
Location: 72014 - 73840 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_46
Type: TF
Location: 73827 - 75359 (+)
Type: TF
Location: 73827 - 75359 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_47
Type: CAZyme
Location: 75507 - 79502 (-)
Type: CAZyme
Location: 75507 - 79502 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_48
Type: pfam
Location: 79649 - 81472 (-)
Type: pfam
Location: 79649 - 81472 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2829_49
Type: CAZyme
Location: 81725 - 85696 (-)
Type: CAZyme
Location: 81725 - 85696 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.