Cluster: BackhedF_2015_ERR525690_bin.1_CGC70
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_04291
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_21 | 21615 | 23828 | - | GH35 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_22 | 23833 | 26433 | - | GH78 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_23 | 26498 | 27394 | - | 3.A.1.1.9 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_24 | 27403 | 28338 | - | 3.A.1.1.9 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_25 | 28354 | 30042 | - | 3.A.1.1.9 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_26 | 30150 | 31793 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_27 | 31786 | 33540 | - | 8.A.59.2.1 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_28 | 33930 | 34586 | + | CAT |
| TC | BackhedF_2015_ERR525690_bin.1_k119_2557 | BackhedF_2015_ERR525690_bin.1_k119_2557_29 | 34908 | 35561 | - | 3.A.1.124.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_21
Type: CAZyme
Location: 21615 - 23828 (-)
Type: CAZyme
Location: 21615 - 23828 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_22
Type: CAZyme
Location: 23833 - 26433 (-)
Type: CAZyme
Location: 23833 - 26433 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_23
Type: TC
Location: 26498 - 27394 (-)
Type: TC
Location: 26498 - 27394 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_24
Type: TC
Location: 27403 - 28338 (-)
Type: TC
Location: 27403 - 28338 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_25
Type: TC
Location: 28354 - 30042 (-)
Type: TC
Location: 28354 - 30042 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_26
Type: TF
Location: 30150 - 31793 (-)
Type: TF
Location: 30150 - 31793 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_27
Type: TC
Location: 31786 - 33540 (-)
Type: TC
Location: 31786 - 33540 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_28
Type: pfam
Location: 33930 - 34586 (+)
Type: pfam
Location: 33930 - 34586 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_2557_29
Type: TC
Location: 34908 - 35561 (-)
Type: TC
Location: 34908 - 35561 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.