Cluster: BackhedF_2015_ERR525690_bin.1_CGC52
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_04989
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_13 | 12210 | 13910 | - | 3.A.6.3.1 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_14 | 14125 | 14499 | - | DUF3792 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_15 | 14685 | 16610 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_16 | 16835 | 18154 | + | 9.A.40.2.4 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_17 | 18233 | 24949 | - | CBM71 | GH2 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_18 | 25075 | 25905 | - | Sigma70_r1_1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_19 | 25927 | 27183 | - | 9.B.174.1.2 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_20 | 27631 | 28719 | - | HTH_30 | GGDEF_2 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1749 | BackhedF_2015_ERR525690_bin.1_k119_1749_21 | 28867 | 29745 | - | 2.A.115.1.2 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_13
Type: TC
Location: 12210 - 13910 (-)
Type: TC
Location: 12210 - 13910 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_14
Type: pfam
Location: 14125 - 14499 (-)
Type: pfam
Location: 14125 - 14499 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_15
Type:
Location: 14685 - 16610 (-)
Type:
Location: 14685 - 16610 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_16
Type: TC
Location: 16835 - 18154 (+)
Type: TC
Location: 16835 - 18154 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_17
Type: CAZyme
Location: 18233 - 24949 (-)
Type: CAZyme
Location: 18233 - 24949 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_18
Type: pfam
Location: 25075 - 25905 (-)
Type: pfam
Location: 25075 - 25905 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_19
Type: TC
Location: 25927 - 27183 (-)
Type: TC
Location: 25927 - 27183 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_20
Type: pfam
Location: 27631 - 28719 (-)
Type: pfam
Location: 27631 - 28719 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1749_21
Type: TC
Location: 28867 - 29745 (-)
Type: TC
Location: 28867 - 29745 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.