Cluster: BackhedF_2015_ERR525690_bin.1_CGC50
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_01202
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_179 | 178838 | 181597 | - | 3.A.3.4.1 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_180 | 181795 | 181926 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_181 | 182366 | 183781 | - | GH1 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_182 | 183781 | 184704 | - | ROK |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_183 | 184744 | 185667 | - | IU_nuc_hydro | Sde182_NH-like |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_184 | 185654 | 187057 | - | 2.A.2.3.3 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_185 | 187285 | 187722 | - | AraC_binding |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1711 | BackhedF_2015_ERR525690_bin.1_k119_1711_186 | 187788 | 189044 | - | 9.A.28.1.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_179
Type: TC
Location: 178838 - 181597 (-)
Type: TC
Location: 178838 - 181597 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_180
Type:
Location: 181795 - 181926 (-)
Type:
Location: 181795 - 181926 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_181
Type: CAZyme
Location: 182366 - 183781 (-)
Type: CAZyme
Location: 182366 - 183781 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_182
Type: pfam
Location: 183781 - 184704 (-)
Type: pfam
Location: 183781 - 184704 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_183
Type: pfam
Location: 184744 - 185667 (-)
Type: pfam
Location: 184744 - 185667 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_184
Type: TC
Location: 185654 - 187057 (-)
Type: TC
Location: 185654 - 187057 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_185
Type: STP
Location: 187285 - 187722 (-)
Type: STP
Location: 187285 - 187722 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1711_186
Type: TC
Location: 187788 - 189044 (-)
Type: TC
Location: 187788 - 189044 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.