Cluster: BackhedF_2015_ERR525690_bin.1_CGC43
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_55 | 65239 | 67119 | - | 3.A.1.135.5 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_56 | 67109 | 68854 | - | 3.A.1.135.5 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_57 | 69001 | 69429 | - | MarR |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_58 | 69621 | 71114 | - | GH39 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_59 | 71095 | 72177 | - | URO-D |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_60 | 72199 | 73029 | - | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_61 | 73029 | 73904 | - | 3.A.1.1.45 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_62 | 73994 | 75337 | - | SBP_bac_1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_63 | 75441 | 76526 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1315 | BackhedF_2015_ERR525690_bin.1_k119_1315_64 | 76568 | 78325 | - | 9.B.33.1.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_55
Type: TC
Location: 65239 - 67119 (-)
Type: TC
Location: 65239 - 67119 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_56
Type: TC
Location: 67109 - 68854 (-)
Type: TC
Location: 67109 - 68854 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_57
Type: TF
Location: 69001 - 69429 (-)
Type: TF
Location: 69001 - 69429 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_58
Type: CAZyme
Location: 69621 - 71114 (-)
Type: CAZyme
Location: 69621 - 71114 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_59
Type: pfam
Location: 71095 - 72177 (-)
Type: pfam
Location: 71095 - 72177 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_60
Type: TC
Location: 72199 - 73029 (-)
Type: TC
Location: 72199 - 73029 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_61
Type: TC
Location: 73029 - 73904 (-)
Type: TC
Location: 73029 - 73904 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_62
Type: STP
Location: 73994 - 75337 (-)
Type: STP
Location: 73994 - 75337 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_63
Type: TF
Location: 75441 - 76526 (-)
Type: TF
Location: 75441 - 76526 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1315_64
Type: TC
Location: 76568 - 78325 (-)
Type: TC
Location: 76568 - 78325 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.