Cluster: BackhedF_2015_ERR525690_bin.1_CGC41
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_02638
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_44 | 54985 | 55752 | + | 3.A.1.134.12 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_45 | 55742 | 57760 | + | 3.A.1.134.12 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_46 | 58007 | 59290 | + | 2.A.1.21.23 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_47 | 59296 | 59790 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_48 | 59967 | 61301 | - | 2.A.66.1.13 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_49 | 61357 | 62175 | - | MerR |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_50 | 62538 | 63383 | + | PRD | PRD | CAT_RBD |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_51 | 63473 | 65515 | + | 4.A.1.2.6 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_52 | 65527 | 66960 | + | GH1 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_53 | 66964 | 67221 | + | PTS-HPr |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_54 | 67253 | 68875 | + | 8.A.7.1.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_44
Type: TC
Location: 54985 - 55752 (+)
Type: TC
Location: 54985 - 55752 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_45
Type: TC
Location: 55742 - 57760 (+)
Type: TC
Location: 55742 - 57760 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_46
Type: TC
Location: 58007 - 59290 (+)
Type: TC
Location: 58007 - 59290 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_47
Type:
Location: 59296 - 59790 (-)
Type:
Location: 59296 - 59790 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_48
Type: TC
Location: 59967 - 61301 (-)
Type: TC
Location: 59967 - 61301 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_49
Type: TF
Location: 61357 - 62175 (-)
Type: TF
Location: 61357 - 62175 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_50
Type: pfam
Location: 62538 - 63383 (+)
Type: pfam
Location: 62538 - 63383 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_51
Type: TC
Location: 63473 - 65515 (+)
Type: TC
Location: 63473 - 65515 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_52
Type: CAZyme
Location: 65527 - 66960 (+)
Type: CAZyme
Location: 65527 - 66960 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_53
Type: STP
Location: 66964 - 67221 (+)
Type: STP
Location: 66964 - 67221 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_54
Type: TC
Location: 67253 - 68875 (+)
Type: TC
Location: 67253 - 68875 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.