Cluster: BackhedF_2015_ERR525690_bin.1_CGC39
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_5 | 5307 | 6548 | + | 3.A.1.1.44 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_6 | 6564 | 7442 | + | 3.A.1.1.33 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_7 | 7455 | 8273 | + | 3.A.1.1.39 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_8 | 8639 | 9616 | - | Transposase_31 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_9 | 9930 | 11669 | + | 3.A.1.135.7 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_10 | 11666 | 13453 | + | 3.A.1.135.7 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_11 | 13757 | 14644 | - | HTH_AraC | HTH_AraC |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_12 | 14857 | 17664 | + | GH3 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1257 | BackhedF_2015_ERR525690_bin.1_k119_1257_13 | 17869 | 20241 | + | GH129 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_5
Type: TC
Location: 5307 - 6548 (+)
Type: TC
Location: 5307 - 6548 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_6
Type: TC
Location: 6564 - 7442 (+)
Type: TC
Location: 6564 - 7442 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_7
Type: TC
Location: 7455 - 8273 (+)
Type: TC
Location: 7455 - 8273 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_8
Type: pfam
Location: 8639 - 9616 (-)
Type: pfam
Location: 8639 - 9616 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_9
Type: TC
Location: 9930 - 11669 (+)
Type: TC
Location: 9930 - 11669 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_10
Type: TC
Location: 11666 - 13453 (+)
Type: TC
Location: 11666 - 13453 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_11
Type: TF
Location: 13757 - 14644 (-)
Type: TF
Location: 13757 - 14644 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_12
Type: CAZyme
Location: 14857 - 17664 (+)
Type: CAZyme
Location: 14857 - 17664 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1257_13
Type: CAZyme
Location: 17869 - 20241 (+)
Type: CAZyme
Location: 17869 - 20241 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.