Cluster: BackhedF_2015_ERR525690_bin.1_CGC36
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_19 | 20906 | 21871 | - | 3.A.1.2.13 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_20 | 21941 | 23443 | - | 3.A.1.2.20 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_21 | 23519 | 24616 | - | Peripla_BP_1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_22 | 24702 | 25481 | - | HTH_DeoR |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_23 | 25896 | 27251 | - | 2.A.66.1.28 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_24 | 27615 | 28568 | - | Transposase_31 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_25 | 28901 | 30436 | - | GH78 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_26 | 30468 | 32417 | - | PL27 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_27 | 32461 | 33294 | - | 3.A.1.1.18 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_28 | 33294 | 34193 | - | 3.A.1.1.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_1203 | BackhedF_2015_ERR525690_bin.1_k119_1203_29 | 34421 | 35725 | - | 3.A.1.1.16 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_19
Type: TC
Location: 20906 - 21871 (-)
Type: TC
Location: 20906 - 21871 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_20
Type: TC
Location: 21941 - 23443 (-)
Type: TC
Location: 21941 - 23443 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_21
Type: STP
Location: 23519 - 24616 (-)
Type: STP
Location: 23519 - 24616 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_22
Type: TF
Location: 24702 - 25481 (-)
Type: TF
Location: 24702 - 25481 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_23
Type: TC
Location: 25896 - 27251 (-)
Type: TC
Location: 25896 - 27251 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_24
Type: pfam
Location: 27615 - 28568 (-)
Type: pfam
Location: 27615 - 28568 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_25
Type: CAZyme
Location: 28901 - 30436 (-)
Type: CAZyme
Location: 28901 - 30436 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_26
Type: CAZyme
Location: 30468 - 32417 (-)
Type: CAZyme
Location: 30468 - 32417 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_27
Type: TC
Location: 32461 - 33294 (-)
Type: TC
Location: 32461 - 33294 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_28
Type: TC
Location: 33294 - 34193 (-)
Type: TC
Location: 33294 - 34193 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_1203_29
Type: TC
Location: 34421 - 35725 (-)
Type: TC
Location: 34421 - 35725 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.