Cluster: BackhedF_2015_ERR525690_bin.1_CGC31
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_02637
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_40 | 52111 | 56268 | - | GH43_26 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_41 | 56367 | 59240 | - | Big_2 | Laminin_G_3 | Laminin_G_3 | aBig_2 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_42 | 59258 | 61498 | - | GH43_29 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_43 | 61643 | 69382 | - | GH43_22 | GH43_22 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_44 | 69795 | 71195 | - | Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_45 | 71237 | 75346 | - | FtsX | FtsX |
| TC | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_46 | 75354 | 76073 | - | 3.A.1.122.14 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_47 | 76345 | 77661 | + | Gln-synt_C | Gln-synt_N |
| STP | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_48 | 77733 | 78305 | + | ANTAR | Response_reg |
| TC | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_49 | 78531 | 79931 | - | 2.A.25.1.4 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_40
Type: CAZyme
Location: 52111 - 56268 (-)
Type: CAZyme
Location: 52111 - 56268 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_41
Type: pfam
Location: 56367 - 59240 (-)
Type: pfam
Location: 56367 - 59240 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_42
Type: CAZyme
Location: 59258 - 61498 (-)
Type: CAZyme
Location: 59258 - 61498 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_43
Type: CAZyme
Location: 61643 - 69382 (-)
Type: CAZyme
Location: 61643 - 69382 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_44
Type: pfam
Location: 69795 - 71195 (-)
Type: pfam
Location: 69795 - 71195 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_45
Type: pfam
Location: 71237 - 75346 (-)
Type: pfam
Location: 71237 - 75346 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_46
Type: TC
Location: 75354 - 76073 (-)
Type: TC
Location: 75354 - 76073 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_47
Type: pfam
Location: 76345 - 77661 (+)
Type: pfam
Location: 76345 - 77661 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_48
Type: STP
Location: 77733 - 78305 (+)
Type: STP
Location: 77733 - 78305 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_49
Type: TC
Location: 78531 - 79931 (-)
Type: TC
Location: 78531 - 79931 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.