Cluster: BackhedF_2015_ERR525690_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_07432
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_5 | 4803 | 10772 | - | CBM32 | GH84 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_6 | 10885 | 15675 | - | CBM32 | CBM32 | GH20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_7 | 15898 | 17349 | - | 4.A.1.1.7 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_8 | 17426 | 17674 | - | PTS-HPr |
| TC | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_9 | 17685 | 18164 | - | 4.A.1.2.2 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_10 | 18182 | 19009 | - | PRD | PRD | CAT_RBD |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_11 | 19308 | 21329 | - | GH42 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_12 | 21368 | 22399 | - | LacI |
| TC | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_13 | 22506 | 23312 | - | 3.A.1.1.4 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_14 | 23305 | 24186 | - | 3.A.1.1.4 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_277 | BackhedF_2015_ERR525690_bin.1_k119_277_15 | 24292 | 25659 | - | 3.A.1.1.4 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_5
Type: CAZyme
Location: 4803 - 10772 (-)
Type: CAZyme
Location: 4803 - 10772 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_6
Type: CAZyme
Location: 10885 - 15675 (-)
Type: CAZyme
Location: 10885 - 15675 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_7
Type: TC
Location: 15898 - 17349 (-)
Type: TC
Location: 15898 - 17349 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_8
Type: STP
Location: 17426 - 17674 (-)
Type: STP
Location: 17426 - 17674 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_9
Type: TC
Location: 17685 - 18164 (-)
Type: TC
Location: 17685 - 18164 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_10
Type: pfam
Location: 18182 - 19009 (-)
Type: pfam
Location: 18182 - 19009 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_11
Type: CAZyme
Location: 19308 - 21329 (-)
Type: CAZyme
Location: 19308 - 21329 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_12
Type: TF
Location: 21368 - 22399 (-)
Type: TF
Location: 21368 - 22399 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_13
Type: TC
Location: 22506 - 23312 (-)
Type: TC
Location: 22506 - 23312 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_14
Type: TC
Location: 23305 - 24186 (-)
Type: TC
Location: 23305 - 24186 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_277_15
Type: TC
Location: 24292 - 25659 (-)
Type: TC
Location: 24292 - 25659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.