Cluster: BackhedF_2015_ERR525690_bin.1_CGC29
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_2 | 788 | 3592 | - | GH2 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_3 | 3579 | 5342 | - | 8.A.59.2.1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_4 | 5339 | 6148 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_5 | 6199 | 7032 | - | 3.A.1.1.47 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_6 | 7047 | 7928 | - | 3.A.1.1.11 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_7 | 8002 | 9357 | - | SBP_bac_1 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_8 | 9579 | 15128 | - | GH95 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_9 | 15490 | 16170 | + | Isochorismatase |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_10 | 16189 | 17358 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_954 | BackhedF_2015_ERR525690_bin.1_k119_954_11 | 17507 | 18763 | - | GT2 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_2
Type: CAZyme
Location: 788 - 3592 (-)
Type: CAZyme
Location: 788 - 3592 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_3
Type: TC
Location: 3579 - 5342 (-)
Type: TC
Location: 3579 - 5342 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_4
Type: TF
Location: 5339 - 6148 (-)
Type: TF
Location: 5339 - 6148 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_5
Type: TC
Location: 6199 - 7032 (-)
Type: TC
Location: 6199 - 7032 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_6
Type: TC
Location: 7047 - 7928 (-)
Type: TC
Location: 7047 - 7928 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_7
Type: STP
Location: 8002 - 9357 (-)
Type: STP
Location: 8002 - 9357 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_8
Type: CAZyme
Location: 9579 - 15128 (-)
Type: CAZyme
Location: 9579 - 15128 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_9
Type: pfam
Location: 15490 - 16170 (+)
Type: pfam
Location: 15490 - 16170 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_10
Type: pfam
Location: 16189 - 17358 (-)
Type: pfam
Location: 16189 - 17358 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_954_11
Type: CAZyme
Location: 17507 - 18763 (-)
Type: CAZyme
Location: 17507 - 18763 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.