Cluster: BackhedF_2015_ERR525690_bin.1_CGC24
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_8 | 13083 | 14330 | + | GH29 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_9 | 14397 | 15452 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_10 | 15445 | 15933 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_11 | 16004 | 16258 | - | 3.A.1.122.8 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_12 | 16373 | 16660 | - | 3.A.1.122.14 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_13 | 16678 | 18030 | - | FtsX |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_14 | 18045 | 18650 | - | FtsX |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_15 | 18827 | 27886 | - | GH39 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_16 | 27915 | 29933 | - | GH31_4 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_17 | 30379 | 31227 | - | 3.A.1.1.41 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_18 | 31227 | 32126 | - | 3.A.1.1.7 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_19 | 32203 | 33522 | - | 3.A.1.1.44 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_20 | 33628 | 35154 | - | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_784 | BackhedF_2015_ERR525690_bin.1_k119_784_21 | 35167 | 36972 | - | 8.A.59.2.1 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_8
Type: CAZyme
Location: 13083 - 14330 (+)
Type: CAZyme
Location: 13083 - 14330 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_9
Type:
Location: 14397 - 15452 (-)
Type:
Location: 14397 - 15452 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_10
Type: STP
Location: 15445 - 15933 (-)
Type: STP
Location: 15445 - 15933 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_11
Type: TC
Location: 16004 - 16258 (-)
Type: TC
Location: 16004 - 16258 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_12
Type: TC
Location: 16373 - 16660 (-)
Type: TC
Location: 16373 - 16660 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_13
Type: pfam
Location: 16678 - 18030 (-)
Type: pfam
Location: 16678 - 18030 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_14
Type: pfam
Location: 18045 - 18650 (-)
Type: pfam
Location: 18045 - 18650 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_15
Type: CAZyme
Location: 18827 - 27886 (-)
Type: CAZyme
Location: 18827 - 27886 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_16
Type: CAZyme
Location: 27915 - 29933 (-)
Type: CAZyme
Location: 27915 - 29933 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_17
Type: TC
Location: 30379 - 31227 (-)
Type: TC
Location: 30379 - 31227 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_18
Type: TC
Location: 31227 - 32126 (-)
Type: TC
Location: 31227 - 32126 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_19
Type: TC
Location: 32203 - 33522 (-)
Type: TC
Location: 32203 - 33522 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_20
Type: TF
Location: 33628 - 35154 (-)
Type: TF
Location: 33628 - 35154 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_784_21
Type: TC
Location: 35167 - 36972 (-)
Type: TC
Location: 35167 - 36972 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.