Cluster: BackhedF_2015_ERR525690_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_02421
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_21 | 25886 | 31693 | - | GH123 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_22 | 32083 | 33372 | - | GH29 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_23 | 33414 | 34442 | - | GH18 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_24 | 34451 | 36967 | - | GH2 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_25 | 36989 | 38908 | - | GH20 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_26 | 38983 | 40455 | - | GH29 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_27 | 40479 | 42122 | - | SBP_bac_1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_28 | 42217 | 43122 | - | 3.A.1.1.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_29 | 43141 | 44091 | - | 3.A.1.1.10 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_30 | 44711 | 45745 | + | LacI |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_31 | 45825 | 46859 | - | URO-D |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_32 | 46856 | 48625 | - | GH13 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_758 | BackhedF_2015_ERR525690_bin.1_k119_758_33 | 48689 | 49591 | - | 3.A.1.1.47 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_21
Type: CAZyme
Location: 25886 - 31693 (-)
Type: CAZyme
Location: 25886 - 31693 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_22
Type: CAZyme
Location: 32083 - 33372 (-)
Type: CAZyme
Location: 32083 - 33372 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_23
Type: CAZyme
Location: 33414 - 34442 (-)
Type: CAZyme
Location: 33414 - 34442 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_24
Type: CAZyme
Location: 34451 - 36967 (-)
Type: CAZyme
Location: 34451 - 36967 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_25
Type: CAZyme
Location: 36989 - 38908 (-)
Type: CAZyme
Location: 36989 - 38908 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_26
Type: CAZyme
Location: 38983 - 40455 (-)
Type: CAZyme
Location: 38983 - 40455 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_27
Type: STP
Location: 40479 - 42122 (-)
Type: STP
Location: 40479 - 42122 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_28
Type: TC
Location: 42217 - 43122 (-)
Type: TC
Location: 42217 - 43122 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_29
Type: TC
Location: 43141 - 44091 (-)
Type: TC
Location: 43141 - 44091 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_30
Type: TF
Location: 44711 - 45745 (+)
Type: TF
Location: 44711 - 45745 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_31
Type: pfam
Location: 45825 - 46859 (-)
Type: pfam
Location: 45825 - 46859 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_32
Type: CAZyme
Location: 46856 - 48625 (-)
Type: CAZyme
Location: 46856 - 48625 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_758_33
Type: TC
Location: 48689 - 49591 (-)
Type: TC
Location: 48689 - 49591 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.