Cluster: BackhedF_2015_ERR525690_bin.1_CGC156
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_7 | 9690 | 10691 | - | 3.A.1.2.14 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_8 | 10726 | 12351 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_9 | 12370 | 13827 | - | 9.B.33.1.1 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_10 | 13926 | 14036 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_11 | 14037 | 15677 | - | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_12 | 16010 | 17029 | - | 3.A.1.2.25 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_13 | 17029 | 18096 | - | 3.A.1.2.14 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_14 | 18098 | 19609 | - | 3.A.1.2.23 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_15 | 19799 | 20956 | - | 3.A.1.2.14 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_16 | 21426 | 23063 | - | HTH_AraC | HTH_AraC |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_4945 | BackhedF_2015_ERR525690_bin.1_k119_4945_17 | 23262 | 29717 | - | GH146 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_7
Type: TC
Location: 9690 - 10691 (-)
Type: TC
Location: 9690 - 10691 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_8
Type: TF
Location: 10726 - 12351 (-)
Type: TF
Location: 10726 - 12351 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_9
Type: TC
Location: 12370 - 13827 (-)
Type: TC
Location: 12370 - 13827 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_10
Type:
Location: 13926 - 14036 (-)
Type:
Location: 13926 - 14036 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_11
Type: TF
Location: 14037 - 15677 (-)
Type: TF
Location: 14037 - 15677 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_12
Type: TC
Location: 16010 - 17029 (-)
Type: TC
Location: 16010 - 17029 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_13
Type: TC
Location: 17029 - 18096 (-)
Type: TC
Location: 17029 - 18096 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_14
Type: TC
Location: 18098 - 19609 (-)
Type: TC
Location: 18098 - 19609 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_15
Type: TC
Location: 19799 - 20956 (-)
Type: TC
Location: 19799 - 20956 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_16
Type: TF
Location: 21426 - 23063 (-)
Type: TF
Location: 21426 - 23063 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4945_17
Type: CAZyme
Location: 23262 - 29717 (-)
Type: CAZyme
Location: 23262 - 29717 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525690_bin.1_k119_4945_14 | vegan > omnivore | 1.56601 | 0.03430 |
| BackhedF_2015_ERR525690_bin.1_k119_4945_15 | vegan > omnivore | 1.08998 | 0.03430 |