Cluster: BackhedF_2015_ERR525690_bin.1_CGC151
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_02634
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_21 | 19914 | 20969 | + | 3.A.15.2.1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_22 | 20981 | 21781 | - | HTH_AraC |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_23 | 21918 | 23240 | + | GH4 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_24 | 23377 | 24294 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_25 | 24679 | 25590 | + | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_26 | 25657 | 26487 | - | 3.A.1.1.36 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_27 | 26502 | 27398 | - | 3.A.1.1.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_28 | 27558 | 28922 | - | 3.A.1.1.44 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_29 | 29641 | 30297 | + | 9.B.28.1.3 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_30 | 30460 | 32652 | - | GH36 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_31 | 33074 | 34432 | + | Citrate_synt |
| TF | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_32 | 34434 | 34901 | + | MarR |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_33 | 34995 | 35633 | - | 2.A.115.2.14 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_34 | 35652 | 36362 | - | 3.A.1.4.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_35 | 36373 | 37131 | - | 3.A.1.4.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_36 | 37134 | 38105 | - | 3.A.1.4.8 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_37 | 38114 | 39001 | - | 3.A.1.4.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_4825 | BackhedF_2015_ERR525690_bin.1_k119_4825_38 | 39299 | 40543 | - | 3.A.1.4.10 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_21
Type: TC
Location: 19914 - 20969 (+)
Type: TC
Location: 19914 - 20969 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_22
Type: TF
Location: 20981 - 21781 (-)
Type: TF
Location: 20981 - 21781 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_23
Type: CAZyme
Location: 21918 - 23240 (+)
Type: CAZyme
Location: 21918 - 23240 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_24
Type:
Location: 23377 - 24294 (-)
Type:
Location: 23377 - 24294 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_25
Type: TF
Location: 24679 - 25590 (+)
Type: TF
Location: 24679 - 25590 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_26
Type: TC
Location: 25657 - 26487 (-)
Type: TC
Location: 25657 - 26487 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_27
Type: TC
Location: 26502 - 27398 (-)
Type: TC
Location: 26502 - 27398 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_28
Type: TC
Location: 27558 - 28922 (-)
Type: TC
Location: 27558 - 28922 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_29
Type: TC
Location: 29641 - 30297 (+)
Type: TC
Location: 29641 - 30297 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_30
Type: CAZyme
Location: 30460 - 32652 (-)
Type: CAZyme
Location: 30460 - 32652 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_31
Type: STP
Location: 33074 - 34432 (+)
Type: STP
Location: 33074 - 34432 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_32
Type: TF
Location: 34434 - 34901 (+)
Type: TF
Location: 34434 - 34901 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_33
Type: TC
Location: 34995 - 35633 (-)
Type: TC
Location: 34995 - 35633 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_34
Type: TC
Location: 35652 - 36362 (-)
Type: TC
Location: 35652 - 36362 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_35
Type: TC
Location: 36373 - 37131 (-)
Type: TC
Location: 36373 - 37131 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_36
Type: TC
Location: 37134 - 38105 (-)
Type: TC
Location: 37134 - 38105 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_37
Type: TC
Location: 38114 - 39001 (-)
Type: TC
Location: 38114 - 39001 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_4825_38
Type: TC
Location: 39299 - 40543 (-)
Type: TC
Location: 39299 - 40543 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.