Cluster: BackhedF_2015_ERR525690_bin.1_CGC15
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_07575
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_1 | 350 | 2242 | - | GH146 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_2 | 2313 | 3332 | - | LacI |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_3 | 3411 | 4619 | - | Amidohydro_2 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_4 | 4643 | 5482 | - | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_5 | 5482 | 6324 | - | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_6 | 6394 | 7833 | - | 3.A.1.1.45 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_7 | 8035 | 8973 | + | HTH_AraC | HTH_AraC |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_8 | 9116 | 9919 | - | Metallophos | Metallophos_2 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_9 | 9977 | 10981 | - | 3.A.1.5.20 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_10 | 11013 | 11480 | - | LOR |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_11 | 11620 | 12624 | - | 3.A.1.5.15 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_12 | 12716 | 13531 | - | 3.A.1.5.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_13 | 13541 | 14482 | - | 3.A.1.5.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_673 | BackhedF_2015_ERR525690_bin.1_k119_673_14 | 14505 | 16139 | - | 3.A.1.5.39 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_1
Type: CAZyme
Location: 350 - 2242 (-)
Type: CAZyme
Location: 350 - 2242 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_2
Type: TF
Location: 2313 - 3332 (-)
Type: TF
Location: 2313 - 3332 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_3
Type: pfam
Location: 3411 - 4619 (-)
Type: pfam
Location: 3411 - 4619 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_4
Type: TC
Location: 4643 - 5482 (-)
Type: TC
Location: 4643 - 5482 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_5
Type: TC
Location: 5482 - 6324 (-)
Type: TC
Location: 5482 - 6324 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_6
Type: TC
Location: 6394 - 7833 (-)
Type: TC
Location: 6394 - 7833 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_7
Type: TF
Location: 8035 - 8973 (+)
Type: TF
Location: 8035 - 8973 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_8
Type: pfam
Location: 9116 - 9919 (-)
Type: pfam
Location: 9116 - 9919 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_9
Type: TC
Location: 9977 - 10981 (-)
Type: TC
Location: 9977 - 10981 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_10
Type: pfam
Location: 11013 - 11480 (-)
Type: pfam
Location: 11013 - 11480 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_11
Type: TC
Location: 11620 - 12624 (-)
Type: TC
Location: 11620 - 12624 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_12
Type: TC
Location: 12716 - 13531 (-)
Type: TC
Location: 12716 - 13531 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_13
Type: TC
Location: 13541 - 14482 (-)
Type: TC
Location: 13541 - 14482 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_673_14
Type: TC
Location: 14505 - 16139 (-)
Type: TC
Location: 14505 - 16139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.