Cluster: BackhedF_2015_ERR525690_bin.1_CGC108
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_02632
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_2 | 275 | 871 | - | 2.A.115.2.14 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_3 | 899 | 2752 | - | 3.A.1.135.6 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_4 | 2749 | 4902 | - | 3.A.1.135.6 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_5 | 4886 | 5368 | - | MarR |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_6 | 5665 | 6363 | + | Pirin | Cupin_2 | Pirin_C_2 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_7 | 6599 | 7702 | - | GH43_26 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_8 | 7728 | 8717 | - | LacI |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_9 | 8803 | 10317 | - | GH51_1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_10 | 10439 | 11266 | - | 3.A.1.1.36 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_11 | 11259 | 12185 | - | 3.A.1.1.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3539 | BackhedF_2015_ERR525690_bin.1_k119_3539_12 | 12312 | 13724 | - | 3.A.1.1.16 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_2
Type: TC
Location: 275 - 871 (-)
Type: TC
Location: 275 - 871 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_3
Type: TC
Location: 899 - 2752 (-)
Type: TC
Location: 899 - 2752 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_4
Type: TC
Location: 2749 - 4902 (-)
Type: TC
Location: 2749 - 4902 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_5
Type: TF
Location: 4886 - 5368 (-)
Type: TF
Location: 4886 - 5368 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_6
Type: pfam
Location: 5665 - 6363 (+)
Type: pfam
Location: 5665 - 6363 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_7
Type: CAZyme
Location: 6599 - 7702 (-)
Type: CAZyme
Location: 6599 - 7702 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_8
Type: TF
Location: 7728 - 8717 (-)
Type: TF
Location: 7728 - 8717 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_9
Type: CAZyme
Location: 8803 - 10317 (-)
Type: CAZyme
Location: 8803 - 10317 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_10
Type: TC
Location: 10439 - 11266 (-)
Type: TC
Location: 10439 - 11266 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_11
Type: TC
Location: 11259 - 12185 (-)
Type: TC
Location: 11259 - 12185 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3539_12
Type: TC
Location: 12312 - 13724 (-)
Type: TC
Location: 12312 - 13724 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.