Cluster: BackhedF_2015_ERR525690_bin.1_CGC104
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_03467
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_1 | 233 | 1603 | - | GH29 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_2 | 1629 | 3413 | - | 8.A.59.2.1 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_3 | 3416 | 4504 | - | HTH_AraC |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_4 | 4981 | 5940 | + | 3.A.1.1.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_5 | 5955 | 6893 | + | 3.A.1.1.29 |
| STP | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_6 | 6934 | 8598 | + | SBP_bac_1 |
| sulfatase | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_7 | 8600 | 10075 | + | S1_26 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_8 | 10156 | 15546 | + | GH111 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_9 | 15678 | 17324 | + | GH123 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_10 | 17467 | 18867 | + | 3.A.1.1.21 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_11 | 19098 | 19976 | + | 3.A.1.1.7 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3512 | BackhedF_2015_ERR525690_bin.1_k119_3512_12 | 19988 | 20833 | + | 3.A.1.1.18 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_1
Type: CAZyme
Location: 233 - 1603 (-)
Type: CAZyme
Location: 233 - 1603 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_2
Type: TC
Location: 1629 - 3413 (-)
Type: TC
Location: 1629 - 3413 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_3
Type: TF
Location: 3416 - 4504 (-)
Type: TF
Location: 3416 - 4504 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_4
Type: TC
Location: 4981 - 5940 (+)
Type: TC
Location: 4981 - 5940 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_5
Type: TC
Location: 5955 - 6893 (+)
Type: TC
Location: 5955 - 6893 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_6
Type: STP
Location: 6934 - 8598 (+)
Type: STP
Location: 6934 - 8598 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_7
Type: sulfatase
Location: 8600 - 10075 (+)
Type: sulfatase
Location: 8600 - 10075 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_8
Type: CAZyme
Location: 10156 - 15546 (+)
Type: CAZyme
Location: 10156 - 15546 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_9
Type: CAZyme
Location: 15678 - 17324 (+)
Type: CAZyme
Location: 15678 - 17324 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_10
Type: TC
Location: 17467 - 18867 (+)
Type: TC
Location: 17467 - 18867 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_11
Type: TC
Location: 19098 - 19976 (+)
Type: TC
Location: 19098 - 19976 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3512_12
Type: TC
Location: 19988 - 20833 (+)
Type: TC
Location: 19988 - 20833 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.