Cluster: BackhedF_2015_ERR525690_bin.1_CGC102
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525690_bin.1
- CGC Family ID: CGCFAM_07563
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_3 | 2238 | 3296 | + | 3.A.1.2.1 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_4 | 3501 | 5045 | + | 3.A.1.2.20 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_5 | 5014 | 5988 | + | 3.A.1.2.13 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_6 | 6184 | 6624 | + | LytTR |
| NULL(UNKNOWN) | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_7 | 6631 | 7029 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_8 | 7114 | 7815 | + | 3.A.1.134.11 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_9 | 7812 | 9539 | + | FtsX |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_10 | 9642 | 11390 | - | 3.A.1.106.2 |
| TF | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_11 | 11873 | 13423 | + | HTH_AraC |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_12 | 13424 | 15148 | - | His_kinase |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_13 | 15519 | 16994 | + | 3.A.1.1.29 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_14 | 17023 | 17934 | + | 3.A.1.1.10 |
| TC | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_15 | 17949 | 18839 | + | 3.A.1.1.29 |
| pfam | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_16 | 19002 | 19619 | - | DUF4304 |
| CAZyme | BackhedF_2015_ERR525690_bin.1_k119_3476 | BackhedF_2015_ERR525690_bin.1_k119_3476_17 | 19883 | 20947 | + | GT2 |
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_3
Type: TC
Location: 2238 - 3296 (+)
Type: TC
Location: 2238 - 3296 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_4
Type: TC
Location: 3501 - 5045 (+)
Type: TC
Location: 3501 - 5045 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_5
Type: TC
Location: 5014 - 5988 (+)
Type: TC
Location: 5014 - 5988 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_6
Type: TF
Location: 6184 - 6624 (+)
Type: TF
Location: 6184 - 6624 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_7
Type:
Location: 6631 - 7029 (+)
Type:
Location: 6631 - 7029 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_8
Type: TC
Location: 7114 - 7815 (+)
Type: TC
Location: 7114 - 7815 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_9
Type: pfam
Location: 7812 - 9539 (+)
Type: pfam
Location: 7812 - 9539 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_10
Type: TC
Location: 9642 - 11390 (-)
Type: TC
Location: 9642 - 11390 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_11
Type: TF
Location: 11873 - 13423 (+)
Type: TF
Location: 11873 - 13423 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_12
Type: pfam
Location: 13424 - 15148 (-)
Type: pfam
Location: 13424 - 15148 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_13
Type: TC
Location: 15519 - 16994 (+)
Type: TC
Location: 15519 - 16994 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_14
Type: TC
Location: 17023 - 17934 (+)
Type: TC
Location: 17023 - 17934 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_15
Type: TC
Location: 17949 - 18839 (+)
Type: TC
Location: 17949 - 18839 (+)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_16
Type: pfam
Location: 19002 - 19619 (-)
Type: pfam
Location: 19002 - 19619 (-)
Gene ID: BackhedF_2015_ERR525690_bin.1_k119_3476_17
Type: CAZyme
Location: 19883 - 20947 (+)
Type: CAZyme
Location: 19883 - 20947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900540475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.