Cluster: BF236_bin.70_CGC11
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: BF236_bin.70
- CGC Family ID: CGCFAM_00122
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_139630 | k141_139630_1 | 2 | 1555 | - | GH2 |
| CAZyme | k141_139630 | k141_139630_2 | 1590 | 3302 | - | GH154 |
| CAZyme | k141_139630 | k141_139630_3 | 3302 | 4468 | - | GH88 |
| TC | k141_139630 | k141_139630_4 | 4546 | 5409 | - | 3.A.1.1.36 |
| TC | k141_139630 | k141_139630_5 | 5427 | 6344 | - | 3.A.1.1.20 |
| STP | k141_139630 | k141_139630_6 | 6460 | 7785 | - | SBP_bac_1 |
| TC | k141_139630 | k141_139630_7 | 8192 | 9979 | + | 8.A.59.2.1 |
| STP | k141_139630 | k141_139630_8 | 10088 | 10465 | + | Response_reg |
| TF | k141_139630 | k141_139630_9 | 10508 | 11371 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_139630 | k141_139630_10 | 11340 | 13160 | + | PL33_1 |
| NULL(UNKNOWN) | k141_139630 | k141_139630_11 | 13174 | 13968 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_139630 | k141_139630_12 | 14022 | 14855 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_139630 | k141_139630_13 | 15292 | 17457 | + | GH112 |
| TC | k141_139630 | k141_139630_14 | 17535 | 18875 | + | 3.A.1.1.4 |
| TC | k141_139630 | k141_139630_15 | 19002 | 19883 | + | 3.A.1.1.4 |
| TC | k141_139630 | k141_139630_16 | 19876 | 20682 | + | 3.A.1.1.4 |
| NULL(UNKNOWN) | k141_139630 | k141_139630_17 | 20682 | 21143 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_139630 | k141_139630_18 | 21106 | 22401 | + | GH136 |
Gene ID: k141_139630_1
Type: CAZyme
Location: 2 - 1555 (-)
Type: CAZyme
Location: 2 - 1555 (-)
Gene ID: k141_139630_2
Type: CAZyme
Location: 1590 - 3302 (-)
Type: CAZyme
Location: 1590 - 3302 (-)
Gene ID: k141_139630_3
Type: CAZyme
Location: 3302 - 4468 (-)
Type: CAZyme
Location: 3302 - 4468 (-)
Gene ID: k141_139630_4
Type: TC
Location: 4546 - 5409 (-)
Type: TC
Location: 4546 - 5409 (-)
Gene ID: k141_139630_5
Type: TC
Location: 5427 - 6344 (-)
Type: TC
Location: 5427 - 6344 (-)
Gene ID: k141_139630_6
Type: STP
Location: 6460 - 7785 (-)
Type: STP
Location: 6460 - 7785 (-)
Gene ID: k141_139630_7
Type: TC
Location: 8192 - 9979 (+)
Type: TC
Location: 8192 - 9979 (+)
Gene ID: k141_139630_8
Type: STP
Location: 10088 - 10465 (+)
Type: STP
Location: 10088 - 10465 (+)
Gene ID: k141_139630_9
Type: TF
Location: 10508 - 11371 (+)
Type: TF
Location: 10508 - 11371 (+)
Gene ID: k141_139630_10
Type: CAZyme
Location: 11340 - 13160 (+)
Type: CAZyme
Location: 11340 - 13160 (+)
Gene ID: k141_139630_11
Type:
Location: 13174 - 13968 (+)
Type:
Location: 13174 - 13968 (+)
Gene ID: k141_139630_12
Type: TF
Location: 14022 - 14855 (-)
Type: TF
Location: 14022 - 14855 (-)
Gene ID: k141_139630_13
Type: CAZyme
Location: 15292 - 17457 (+)
Type: CAZyme
Location: 15292 - 17457 (+)
Gene ID: k141_139630_14
Type: TC
Location: 17535 - 18875 (+)
Type: TC
Location: 17535 - 18875 (+)
Gene ID: k141_139630_15
Type: TC
Location: 19002 - 19883 (+)
Type: TC
Location: 19002 - 19883 (+)
Gene ID: k141_139630_16
Type: TC
Location: 19876 - 20682 (+)
Type: TC
Location: 19876 - 20682 (+)
Gene ID: k141_139630_17
Type:
Location: 20682 - 21143 (+)
Type:
Location: 20682 - 21143 (+)
Gene ID: k141_139630_18
Type: CAZyme
Location: 21106 - 22401 (+)
Type: CAZyme
Location: 21106 - 22401 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934561205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.