Cluster: BF223_maxbin.011_sub_CGC12
🧬 Cluster Details
- Gene Count: 36
- CAZyme Count: 1
- Substrate:
- Genome ID: BF223_maxbin.011_sub
- CGC Family ID: CGCFAM_05119
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_70525 | k141_70525_50 | 57450 | 58109 | - | 3.A.1.24.5 |
| TC | k141_70525 | k141_70525_51 | 58115 | 59176 | - | 3.A.1.24.3 |
| TC | k141_70525 | k141_70525_52 | 59278 | 60150 | - | 3.A.1.24.5 |
| pfam | k141_70525 | k141_70525_53 | 60239 | 61249 | - | ApbA | ApbA_C |
| TC | k141_70525 | k141_70525_54 | 61492 | 62397 | - | 3.A.1.3.27 |
| TC | k141_70525 | k141_70525_55 | 62479 | 63306 | - | 3.A.1.3.4 |
| TC | k141_70525 | k141_70525_56 | 63299 | 63973 | - | 3.A.1.3.2 |
| TC | k141_70525 | k141_70525_57 | 63960 | 64616 | - | 3.A.1.3.12 |
| pfam | k141_70525 | k141_70525_58 | 64884 | 65498 | + | Acetyltransf_1 | Acetyltransf_7 |
| sulfatase | k141_70525 | k141_70525_59 | 65946 | 67961 | - | S1_97 |
| TC | k141_70525 | k141_70525_60 | 68273 | 69469 | - | 2.A.45.2.6 |
| pfam | k141_70525 | k141_70525_61 | 69854 | 71938 | - | Toprim | Zn_ribbon_DnaG | DNAG_N | DnaB_bind | Toprim_2 | Toprim_4 |
| pfam | k141_70525 | k141_70525_62 | 72044 | 73627 | - | Ala_racemase_C | Ala_racemase_N |
| TC | k141_70525 | k141_70525_63 | 73646 | 75073 | + | 2.A.3.3.22 |
| NULL(UNKNOWN) | k141_70525 | k141_70525_64 | 75271 | 75807 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_70525 | k141_70525_65 | 75915 | 76400 | - | LuxS |
| TC | k141_70525 | k141_70525_66 | 76567 | 78516 | - | 2.A.16.2.2 |
| pfam | k141_70525 | k141_70525_67 | 78628 | 79809 | - | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP |
| STP | k141_70525 | k141_70525_68 | 79889 | 80899 | - | PALP |
| TC | k141_70525 | k141_70525_69 | 81303 | 82073 | - | 3.A.1.5.41 |
| TC | k141_70525 | k141_70525_70 | 82073 | 82855 | - | 3.A.1.5.10 |
| TC | k141_70525 | k141_70525_71 | 82852 | 83796 | - | 3.A.1.5.3 |
| TC | k141_70525 | k141_70525_72 | 83793 | 84773 | - | 3.A.1.5.3 |
| TC | k141_70525 | k141_70525_73 | 84784 | 86439 | - | 3.A.1.5.39 |
| pfam | k141_70525 | k141_70525_74 | 86655 | 87938 | + | Flavoprotein | DFP |
| pfam | k141_70525 | k141_70525_75 | 88006 | 88776 | + | Pan_kinase |
| TC | k141_70525 | k141_70525_76 | 88892 | 90319 | - | 3.A.1.1.48 |
| CAZyme | k141_70525 | k141_70525_77 | 90527 | 92596 | - | GH42 |
| TC | k141_70525 | k141_70525_78 | 92771 | 94063 | - | 2.A.23.4.1 |
| pfam | k141_70525 | k141_70525_79 | 94276 | 95028 | - | PseudoU_synth_2 |
| STP | k141_70525 | k141_70525_80 | 95040 | 96932 | - | SIS | SIS |
| TC | k141_70525 | k141_70525_81 | 97125 | 97919 | - | 3.A.1.3.24 |
| TC | k141_70525 | k141_70525_82 | 97932 | 98915 | - | 3.A.1.3.24 |
| TC | k141_70525 | k141_70525_83 | 98961 | 99890 | - | 3.A.1.3.24 |
| TC | k141_70525 | k141_70525_84 | 100181 | 101122 | - | 3.A.1.3.24 |
| TC | k141_70525 | k141_70525_85 | 101368 | 102315 | - | 3.A.1.3.24 |
Gene ID: k141_70525_50
Type: TC
Location: 57450 - 58109 (-)
Type: TC
Location: 57450 - 58109 (-)
Gene ID: k141_70525_51
Type: TC
Location: 58115 - 59176 (-)
Type: TC
Location: 58115 - 59176 (-)
Gene ID: k141_70525_52
Type: TC
Location: 59278 - 60150 (-)
Type: TC
Location: 59278 - 60150 (-)
Gene ID: k141_70525_53
Type: pfam
Location: 60239 - 61249 (-)
Type: pfam
Location: 60239 - 61249 (-)
Gene ID: k141_70525_54
Type: TC
Location: 61492 - 62397 (-)
Type: TC
Location: 61492 - 62397 (-)
Gene ID: k141_70525_55
Type: TC
Location: 62479 - 63306 (-)
Type: TC
Location: 62479 - 63306 (-)
Gene ID: k141_70525_56
Type: TC
Location: 63299 - 63973 (-)
Type: TC
Location: 63299 - 63973 (-)
Gene ID: k141_70525_57
Type: TC
Location: 63960 - 64616 (-)
Type: TC
Location: 63960 - 64616 (-)
Gene ID: k141_70525_58
Type: pfam
Location: 64884 - 65498 (+)
Type: pfam
Location: 64884 - 65498 (+)
Gene ID: k141_70525_59
Type: sulfatase
Location: 65946 - 67961 (-)
Type: sulfatase
Location: 65946 - 67961 (-)
Gene ID: k141_70525_60
Type: TC
Location: 68273 - 69469 (-)
Type: TC
Location: 68273 - 69469 (-)
Gene ID: k141_70525_61
Type: pfam
Location: 69854 - 71938 (-)
Type: pfam
Location: 69854 - 71938 (-)
Gene ID: k141_70525_62
Type: pfam
Location: 72044 - 73627 (-)
Type: pfam
Location: 72044 - 73627 (-)
Gene ID: k141_70525_63
Type: TC
Location: 73646 - 75073 (+)
Type: TC
Location: 73646 - 75073 (+)
Gene ID: k141_70525_64
Type:
Location: 75271 - 75807 (-)
Type:
Location: 75271 - 75807 (-)
Gene ID: k141_70525_65
Type: pfam
Location: 75915 - 76400 (-)
Type: pfam
Location: 75915 - 76400 (-)
Gene ID: k141_70525_66
Type: TC
Location: 76567 - 78516 (-)
Type: TC
Location: 76567 - 78516 (-)
Gene ID: k141_70525_67
Type: pfam
Location: 78628 - 79809 (-)
Type: pfam
Location: 78628 - 79809 (-)
Gene ID: k141_70525_68
Type: STP
Location: 79889 - 80899 (-)
Type: STP
Location: 79889 - 80899 (-)
Gene ID: k141_70525_69
Type: TC
Location: 81303 - 82073 (-)
Type: TC
Location: 81303 - 82073 (-)
Gene ID: k141_70525_70
Type: TC
Location: 82073 - 82855 (-)
Type: TC
Location: 82073 - 82855 (-)
Gene ID: k141_70525_71
Type: TC
Location: 82852 - 83796 (-)
Type: TC
Location: 82852 - 83796 (-)
Gene ID: k141_70525_72
Type: TC
Location: 83793 - 84773 (-)
Type: TC
Location: 83793 - 84773 (-)
Gene ID: k141_70525_73
Type: TC
Location: 84784 - 86439 (-)
Type: TC
Location: 84784 - 86439 (-)
Gene ID: k141_70525_74
Type: pfam
Location: 86655 - 87938 (+)
Type: pfam
Location: 86655 - 87938 (+)
Gene ID: k141_70525_75
Type: pfam
Location: 88006 - 88776 (+)
Type: pfam
Location: 88006 - 88776 (+)
Gene ID: k141_70525_76
Type: TC
Location: 88892 - 90319 (-)
Type: TC
Location: 88892 - 90319 (-)
Gene ID: k141_70525_77
Type: CAZyme
Location: 90527 - 92596 (-)
Type: CAZyme
Location: 90527 - 92596 (-)
Gene ID: k141_70525_78
Type: TC
Location: 92771 - 94063 (-)
Type: TC
Location: 92771 - 94063 (-)
Gene ID: k141_70525_79
Type: pfam
Location: 94276 - 95028 (-)
Type: pfam
Location: 94276 - 95028 (-)
Gene ID: k141_70525_80
Type: STP
Location: 95040 - 96932 (-)
Type: STP
Location: 95040 - 96932 (-)
Gene ID: k141_70525_81
Type: TC
Location: 97125 - 97919 (-)
Type: TC
Location: 97125 - 97919 (-)
Gene ID: k141_70525_82
Type: TC
Location: 97932 - 98915 (-)
Type: TC
Location: 97932 - 98915 (-)
Gene ID: k141_70525_83
Type: TC
Location: 98961 - 99890 (-)
Type: TC
Location: 98961 - 99890 (-)
Gene ID: k141_70525_84
Type: TC
Location: 100181 - 101122 (-)
Type: TC
Location: 100181 - 101122 (-)
Gene ID: k141_70525_85
Type: TC
Location: 101368 - 102315 (-)
Type: TC
Location: 101368 - 102315 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium kashiwanohense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_70525_50 | vegan > omnivore | 1.66613 | 0.00629 |
| k141_70525_51 | vegan > omnivore | 1.28732 | 0.00629 |
| k141_70525_52 | vegan > omnivore | 1.95683 | 0.00629 |
| k141_70525_53 | vegan > omnivore | 1.95044 | 0.00629 |
| k141_70525_59 | vegetarian > vegan | 1.13524 | 0.00701 |
| k141_70525_64 | vegan > omnivore | 1.01561 | 0.00629 |
| k141_70525_65 | vegetarian > omnivore | 1.03602 | 0.01770 |
| k141_70525_71 | vegetarian > vegan | 2.28677 | 0.04792 |