Cluster: B93.CMAG_1_CGC41
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: B93.CMAG_1
- CGC Family ID: CGCFAM_04973
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B93_contig_2161 | B93_contig_2161_2308 | 2863859 | 2864839 | - | 2.A.28.3.4 |
| pfam | B93_contig_2161 | B93_contig_2161_2309 | 2864877 | 2866028 | - | tRNA-synt_1b |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_2310 | 2866316 | 2866552 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B93_contig_2161 | B93_contig_2161_2311 | 2866606 | 2866944 | - | 2.A.7.34.1 |
| TC | B93_contig_2161 | B93_contig_2161_2312 | 2866988 | 2867944 | - | 3.A.1.5.22 |
| TC | B93_contig_2161 | B93_contig_2161_2313 | 2867941 | 2868855 | - | 3.A.1.5.1 |
| TC | B93_contig_2161 | B93_contig_2161_2314 | 2868861 | 2870720 | - | 3.A.1.5.1 |
| CAZyme | B93_contig_2161 | B93_contig_2161_2315 | 2871188 | 2873323 | + | GH29 |
| pfam | B93_contig_2161 | B93_contig_2161_2316 | 2873679 | 2874644 | - | Thioredoxin | Thioredoxin_2 | Thioredoxin_7 |
| pfam | B93_contig_2161 | B93_contig_2161_2317 | 2874858 | 2876081 | + | Sacchrp_dh_NADP | Sacchrp_dh_C |
| TC | B93_contig_2161 | B93_contig_2161_2318 | 2876224 | 2876556 | + | 2.A.7.1.11 |
Gene ID: B93_contig_2161_2308
Type: TC
Location: 2863859 - 2864839 (-)
Type: TC
Location: 2863859 - 2864839 (-)
Gene ID: B93_contig_2161_2309
Type: pfam
Location: 2864877 - 2866028 (-)
Type: pfam
Location: 2864877 - 2866028 (-)
Gene ID: B93_contig_2161_2310
Type:
Location: 2866316 - 2866552 (-)
Type:
Location: 2866316 - 2866552 (-)
Gene ID: B93_contig_2161_2311
Type: TC
Location: 2866606 - 2866944 (-)
Type: TC
Location: 2866606 - 2866944 (-)
Gene ID: B93_contig_2161_2312
Type: TC
Location: 2866988 - 2867944 (-)
Type: TC
Location: 2866988 - 2867944 (-)
Gene ID: B93_contig_2161_2313
Type: TC
Location: 2867941 - 2868855 (-)
Type: TC
Location: 2867941 - 2868855 (-)
Gene ID: B93_contig_2161_2314
Type: TC
Location: 2868861 - 2870720 (-)
Type: TC
Location: 2868861 - 2870720 (-)
Gene ID: B93_contig_2161_2315
Type: CAZyme
Location: 2871188 - 2873323 (+)
Type: CAZyme
Location: 2871188 - 2873323 (+)
Gene ID: B93_contig_2161_2316
Type: pfam
Location: 2873679 - 2874644 (-)
Type: pfam
Location: 2873679 - 2874644 (-)
Gene ID: B93_contig_2161_2317
Type: pfam
Location: 2874858 - 2876081 (+)
Type: pfam
Location: 2874858 - 2876081 (+)
Gene ID: B93_contig_2161_2318
Type: TC
Location: 2876224 - 2876556 (+)
Type: TC
Location: 2876224 - 2876556 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.