Cluster: B93.CMAG_1_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: B93.CMAG_1
- CGC Family ID: CGCFAM_01384
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B93_contig_2161 | B93_contig_2161_2157 | 2681915 | 2683531 | + | GH29 |
| pfam | B93_contig_2161 | B93_contig_2161_2158 | 2683556 | 2685940 | + | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia |
| TC | B93_contig_2161 | B93_contig_2161_2159 | 2686194 | 2686802 | + | 4.F.1.1.8 |
| TC | B93_contig_2161 | B93_contig_2161_2160 | 2687286 | 2688575 | + | 1.I.1.1.3 |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_2161 | 2688688 | 2689296 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B93_contig_2161 | B93_contig_2161_2162 | 2689786 | 2691231 | + | GH109 |
| pfam | B93_contig_2161 | B93_contig_2161_2163 | 2691574 | 2692341 | - | Acetyltransf_1 | Acetyltransf_7 | YoaP |
| CAZyme | B93_contig_2161 | B93_contig_2161_2164 | 2692541 | 2694913 | - | GH95 |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_2165 | 2695131 | 2696273 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_2166 | 2696277 | 2697227 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B93_contig_2161 | B93_contig_2161_2167 | 2697251 | 2698441 | - | 2.A.1.26.1 |
Gene ID: B93_contig_2161_2157
Type: CAZyme
Location: 2681915 - 2683531 (+)
Type: CAZyme
Location: 2681915 - 2683531 (+)
Gene ID: B93_contig_2161_2158
Type: pfam
Location: 2683556 - 2685940 (+)
Type: pfam
Location: 2683556 - 2685940 (+)
Gene ID: B93_contig_2161_2159
Type: TC
Location: 2686194 - 2686802 (+)
Type: TC
Location: 2686194 - 2686802 (+)
Gene ID: B93_contig_2161_2160
Type: TC
Location: 2687286 - 2688575 (+)
Type: TC
Location: 2687286 - 2688575 (+)
Gene ID: B93_contig_2161_2161
Type:
Location: 2688688 - 2689296 (+)
Type:
Location: 2688688 - 2689296 (+)
Gene ID: B93_contig_2161_2162
Type: CAZyme
Location: 2689786 - 2691231 (+)
Type: CAZyme
Location: 2689786 - 2691231 (+)
Gene ID: B93_contig_2161_2163
Type: pfam
Location: 2691574 - 2692341 (-)
Type: pfam
Location: 2691574 - 2692341 (-)
Gene ID: B93_contig_2161_2164
Type: CAZyme
Location: 2692541 - 2694913 (-)
Type: CAZyme
Location: 2692541 - 2694913 (-)
Gene ID: B93_contig_2161_2165
Type:
Location: 2695131 - 2696273 (+)
Type:
Location: 2695131 - 2696273 (+)
Gene ID: B93_contig_2161_2166
Type:
Location: 2696277 - 2697227 (+)
Type:
Location: 2696277 - 2697227 (+)
Gene ID: B93_contig_2161_2167
Type: TC
Location: 2697251 - 2698441 (-)
Type: TC
Location: 2697251 - 2698441 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.