Cluster: B93.CMAG_1_CGC15
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: B93.CMAG_1
- CGC Family ID: CGCFAM_01239
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B93_contig_2161 | B93_contig_2161_658 | 800778 | 801266 | - | CBM50 |
| pfam | B93_contig_2161 | B93_contig_2161_659 | 801336 | 802151 | - | TatD_DNase |
| pfam | B93_contig_2161 | B93_contig_2161_660 | 802296 | 803336 | + | LpxR |
| CAZyme | B93_contig_2161 | B93_contig_2161_661 | 803476 | 807270 | + | CBM32 | GH2 |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_662 | 807601 | 808269 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_663 | 808289 | 809344 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B93_contig_2161 | B93_contig_2161_664 | 809649 | 812786 | - | GH33 |
| STP | B93_contig_2161 | B93_contig_2161_665 | 812983 | 815661 | + | HATPase_c | HisKA |
| TF | B93_contig_2161 | B93_contig_2161_666 | 815680 | 816378 | + | Trans_reg_C |
| TC | B93_contig_2161 | B93_contig_2161_667 | 816532 | 817311 | + | 1.B.71.1.5 |
| TC | B93_contig_2161 | B93_contig_2161_668 | 817426 | 819126 | + | 3.A.3.7.2 |
| TC | B93_contig_2161 | B93_contig_2161_669 | 819157 | 821271 | + | 3.A.3.7.2 |
| TC | B93_contig_2161 | B93_contig_2161_670 | 821301 | 821867 | + | 3.A.3.7.2 |
| CAZyme | B93_contig_2161 | B93_contig_2161_671 | 822017 | 823621 | - | GH27 |
| TC | B93_contig_2161 | B93_contig_2161_672 | 823808 | 826390 | + | 3.A.9.1.2 |
Gene ID: B93_contig_2161_658
Type: CAZyme
Location: 800778 - 801266 (-)
Type: CAZyme
Location: 800778 - 801266 (-)
Gene ID: B93_contig_2161_659
Type: pfam
Location: 801336 - 802151 (-)
Type: pfam
Location: 801336 - 802151 (-)
Gene ID: B93_contig_2161_660
Type: pfam
Location: 802296 - 803336 (+)
Type: pfam
Location: 802296 - 803336 (+)
Gene ID: B93_contig_2161_661
Type: CAZyme
Location: 803476 - 807270 (+)
Type: CAZyme
Location: 803476 - 807270 (+)
Gene ID: B93_contig_2161_662
Type:
Location: 807601 - 808269 (-)
Type:
Location: 807601 - 808269 (-)
Gene ID: B93_contig_2161_663
Type:
Location: 808289 - 809344 (-)
Type:
Location: 808289 - 809344 (-)
Gene ID: B93_contig_2161_664
Type: CAZyme
Location: 809649 - 812786 (-)
Type: CAZyme
Location: 809649 - 812786 (-)
Gene ID: B93_contig_2161_665
Type: STP
Location: 812983 - 815661 (+)
Type: STP
Location: 812983 - 815661 (+)
Gene ID: B93_contig_2161_666
Type: TF
Location: 815680 - 816378 (+)
Type: TF
Location: 815680 - 816378 (+)
Gene ID: B93_contig_2161_667
Type: TC
Location: 816532 - 817311 (+)
Type: TC
Location: 816532 - 817311 (+)
Gene ID: B93_contig_2161_668
Type: TC
Location: 817426 - 819126 (+)
Type: TC
Location: 817426 - 819126 (+)
Gene ID: B93_contig_2161_669
Type: TC
Location: 819157 - 821271 (+)
Type: TC
Location: 819157 - 821271 (+)
Gene ID: B93_contig_2161_670
Type: TC
Location: 821301 - 821867 (+)
Type: TC
Location: 821301 - 821867 (+)
Gene ID: B93_contig_2161_671
Type: CAZyme
Location: 822017 - 823621 (-)
Type: CAZyme
Location: 822017 - 823621 (-)
Gene ID: B93_contig_2161_672
Type: TC
Location: 823808 - 826390 (+)
Type: TC
Location: 823808 - 826390 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.