Cluster: B93.CMAG_1_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: B93.CMAG_1
- CGC Family ID: CGCFAM_01284
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B93_contig_2161 | B93_contig_2161_548 | 666948 | 667931 | - | GT8 |
| CAZyme | B93_contig_2161 | B93_contig_2161_549 | 667953 | 668978 | - | GT2 |
| CAZyme | B93_contig_2161 | B93_contig_2161_550 | 668975 | 669949 | - | GT9 |
| pfam | B93_contig_2161 | B93_contig_2161_551 | 669971 | 670957 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | B93_contig_2161 | B93_contig_2161_552 | 671259 | 672413 | + | GT2 |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_553 | 672440 | 673396 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B93_contig_2161 | B93_contig_2161_554 | 673597 | 674973 | + | GT4 |
| CAZyme | B93_contig_2161 | B93_contig_2161_555 | 675096 | 676094 | + | GT10 |
| TC | B93_contig_2161 | B93_contig_2161_556 | 676187 | 678262 | + | 9.B.97.5.1 |
| CAZyme | B93_contig_2161 | B93_contig_2161_557 | 678421 | 679452 | + | GT10 |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_558 | 679493 | 680020 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B93_contig_2161 | B93_contig_2161_559 | 680091 | 680327 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B93_contig_2161 | B93_contig_2161_560 | 680451 | 682316 | - | 2.A.47.4.8 |
Gene ID: B93_contig_2161_548
Type: CAZyme
Location: 666948 - 667931 (-)
Type: CAZyme
Location: 666948 - 667931 (-)
Gene ID: B93_contig_2161_549
Type: CAZyme
Location: 667953 - 668978 (-)
Type: CAZyme
Location: 667953 - 668978 (-)
Gene ID: B93_contig_2161_550
Type: CAZyme
Location: 668975 - 669949 (-)
Type: CAZyme
Location: 668975 - 669949 (-)
Gene ID: B93_contig_2161_551
Type: pfam
Location: 669971 - 670957 (-)
Type: pfam
Location: 669971 - 670957 (-)
Gene ID: B93_contig_2161_552
Type: CAZyme
Location: 671259 - 672413 (+)
Type: CAZyme
Location: 671259 - 672413 (+)
Gene ID: B93_contig_2161_553
Type:
Location: 672440 - 673396 (+)
Type:
Location: 672440 - 673396 (+)
Gene ID: B93_contig_2161_554
Type: CAZyme
Location: 673597 - 674973 (+)
Type: CAZyme
Location: 673597 - 674973 (+)
Gene ID: B93_contig_2161_555
Type: CAZyme
Location: 675096 - 676094 (+)
Type: CAZyme
Location: 675096 - 676094 (+)
Gene ID: B93_contig_2161_556
Type: TC
Location: 676187 - 678262 (+)
Type: TC
Location: 676187 - 678262 (+)
Gene ID: B93_contig_2161_557
Type: CAZyme
Location: 678421 - 679452 (+)
Type: CAZyme
Location: 678421 - 679452 (+)
Gene ID: B93_contig_2161_558
Type:
Location: 679493 - 680020 (-)
Type:
Location: 679493 - 680020 (-)
Gene ID: B93_contig_2161_559
Type:
Location: 680091 - 680327 (-)
Type:
Location: 680091 - 680327 (-)
Gene ID: B93_contig_2161_560
Type: TC
Location: 680451 - 682316 (-)
Type: TC
Location: 680451 - 682316 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.