Cluster: B89.bin_3_CGC57
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_2722 | 3229627 | 3232671 | + | 1.B.14.6.13 |
| TC | B89_contig_1526 | B89_contig_1526_2723 | 3232684 | 3234264 | + | 8.A.46.2.2 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2724 | 3234291 | 3235391 | + | GH18 |
| pfam | B89_contig_1526 | B89_contig_1526_2725 | 3235398 | 3236564 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2726 | 3236679 | 3238883 | + | GH163 |
| pfam | B89_contig_1526 | B89_contig_1526_2727 | 3239283 | 3240365 | - | Thioredoxin | Thioredox_DsbH | Thioredoxin_2 | Thioredoxin_7 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2728 | 3240384 | 3241625 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B89_contig_1526 | B89_contig_1526_2729 | 3241568 | 3242785 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2730 | 3242788 | 3243168 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2731 | 3243279 | 3243518 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B89_contig_1526 | B89_contig_1526_2732 | 3249886 | 3251208 | + | GH29 |
Gene ID: B89_contig_1526_2722
Type: TC
Location: 3229627 - 3232671 (+)
Type: TC
Location: 3229627 - 3232671 (+)
Gene ID: B89_contig_1526_2723
Type: TC
Location: 3232684 - 3234264 (+)
Type: TC
Location: 3232684 - 3234264 (+)
Gene ID: B89_contig_1526_2724
Type: CAZyme
Location: 3234291 - 3235391 (+)
Type: CAZyme
Location: 3234291 - 3235391 (+)
Gene ID: B89_contig_1526_2725
Type: pfam
Location: 3235398 - 3236564 (+)
Type: pfam
Location: 3235398 - 3236564 (+)
Gene ID: B89_contig_1526_2726
Type: CAZyme
Location: 3236679 - 3238883 (+)
Type: CAZyme
Location: 3236679 - 3238883 (+)
Gene ID: B89_contig_1526_2727
Type: pfam
Location: 3239283 - 3240365 (-)
Type: pfam
Location: 3239283 - 3240365 (-)
Gene ID: B89_contig_1526_2728
Type:
Location: 3240384 - 3241625 (-)
Type:
Location: 3240384 - 3241625 (-)
Gene ID: B89_contig_1526_2729
Type: TC
Location: 3241568 - 3242785 (-)
Type: TC
Location: 3241568 - 3242785 (-)
Gene ID: B89_contig_1526_2730
Type:
Location: 3242788 - 3243168 (-)
Type:
Location: 3242788 - 3243168 (-)
Gene ID: B89_contig_1526_2731
Type:
Location: 3243279 - 3243518 (-)
Type:
Location: 3243279 - 3243518 (-)
Gene ID: B89_contig_1526_2732
Type: CAZyme
Location: 3249886 - 3251208 (+)
Type: CAZyme
Location: 3249886 - 3251208 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_2722 | vegetarian > omnivore | 2.46291 | 0.02575 |
| B89_contig_1526_2723 | vegetarian > omnivore | 2.43831 | 0.03453 |
| B89_contig_1526_2724 | vegetarian > omnivore | 2.52459 | 0.00932 |
| B89_contig_1526_2725 | vegetarian > omnivore | 2.64899 | 0.00918 |
| B89_contig_1526_2726 | vegetarian > vegan | 1.01421 | 0.03476 |