Cluster: B89.bin_3_CGC55
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_04397
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_2683 | 3179773 | 3181167 | + | 3.A.1.11.8 |
| TC | B89_contig_1526 | B89_contig_1526_2684 | 3181178 | 3181978 | + | 3.A.1.11.8 |
| TC | B89_contig_1526 | B89_contig_1526_2685 | 3181972 | 3182763 | + | 3.A.1.11.8 |
| STP | B89_contig_1526 | B89_contig_1526_2686 | 3182801 | 3184126 | + | SBP_bac_1 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2687 | 3184237 | 3185184 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B89_contig_1526 | B89_contig_1526_2688 | 3185224 | 3187155 | + | GT51 |
| pfam | B89_contig_1526 | B89_contig_1526_2689 | 3187167 | 3187649 | - | Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2690 | 3187945 | 3190518 | - | GH3 |
| pfam | B89_contig_1526 | B89_contig_1526_2691 | 3190966 | 3192447 | - | SusD_RagB | SusD-like_3 |
| TC | B89_contig_1526 | B89_contig_1526_2692 | 3192483 | 3193913 | - | 1.B.14.6.1 |
| TC | B89_contig_1526 | B89_contig_1526_2693 | 3193955 | 3195490 | - | 1.B.14.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_2694 | 3195617 | 3198388 | - | UvrA_DNA-bind | UvrA_inter |
| pfam | B89_contig_1526 | B89_contig_1526_2695 | 3198626 | 3200125 | + | GHL10 |
| TC | B89_contig_1526 | B89_contig_1526_2696 | 3200364 | 3200972 | + | 1.B.44.2.11 |
Gene ID: B89_contig_1526_2683
Type: TC
Location: 3179773 - 3181167 (+)
Type: TC
Location: 3179773 - 3181167 (+)
Gene ID: B89_contig_1526_2684
Type: TC
Location: 3181178 - 3181978 (+)
Type: TC
Location: 3181178 - 3181978 (+)
Gene ID: B89_contig_1526_2685
Type: TC
Location: 3181972 - 3182763 (+)
Type: TC
Location: 3181972 - 3182763 (+)
Gene ID: B89_contig_1526_2686
Type: STP
Location: 3182801 - 3184126 (+)
Type: STP
Location: 3182801 - 3184126 (+)
Gene ID: B89_contig_1526_2687
Type:
Location: 3184237 - 3185184 (+)
Type:
Location: 3184237 - 3185184 (+)
Gene ID: B89_contig_1526_2688
Type: CAZyme
Location: 3185224 - 3187155 (+)
Type: CAZyme
Location: 3185224 - 3187155 (+)
Gene ID: B89_contig_1526_2689
Type: pfam
Location: 3187167 - 3187649 (-)
Type: pfam
Location: 3187167 - 3187649 (-)
Gene ID: B89_contig_1526_2690
Type: CAZyme
Location: 3187945 - 3190518 (-)
Type: CAZyme
Location: 3187945 - 3190518 (-)
Gene ID: B89_contig_1526_2691
Type: pfam
Location: 3190966 - 3192447 (-)
Type: pfam
Location: 3190966 - 3192447 (-)
Gene ID: B89_contig_1526_2692
Type: TC
Location: 3192483 - 3193913 (-)
Type: TC
Location: 3192483 - 3193913 (-)
Gene ID: B89_contig_1526_2693
Type: TC
Location: 3193955 - 3195490 (-)
Type: TC
Location: 3193955 - 3195490 (-)
Gene ID: B89_contig_1526_2694
Type: pfam
Location: 3195617 - 3198388 (-)
Type: pfam
Location: 3195617 - 3198388 (-)
Gene ID: B89_contig_1526_2695
Type: pfam
Location: 3198626 - 3200125 (+)
Type: pfam
Location: 3198626 - 3200125 (+)
Gene ID: B89_contig_1526_2696
Type: TC
Location: 3200364 - 3200972 (+)
Type: TC
Location: 3200364 - 3200972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.