Cluster: B89.bin_3_CGC53
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_07544
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B89_contig_1526 | B89_contig_1526_2624 | 3095062 | 3097632 | - | GH84 |
| pfam | B89_contig_1526 | B89_contig_1526_2625 | 3097761 | 3099164 | - | DUF5009 |
| pfam | B89_contig_1526 | B89_contig_1526_2626 | 3099332 | 3100795 | - | Metallophos | MetallophosC | MetallophosN |
| TC | B89_contig_1526 | B89_contig_1526_2627 | 3100810 | 3102225 | - | 2.A.1.1.55 |
| pfam | B89_contig_1526 | B89_contig_1526_2628 | 3102241 | 3103347 | - | DUF4434 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2629 | 3103375 | 3104400 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B89_contig_1526 | B89_contig_1526_2630 | 3104538 | 3106178 | - | 8.A.46.2.1 |
| TC | B89_contig_1526 | B89_contig_1526_2631 | 3106189 | 3109332 | - | 1.B.14.6.13 |
| pfam | B89_contig_1526 | B89_contig_1526_2632 | 3109374 | 3110540 | - | GlcNAc_2-epim |
| CAZyme | B89_contig_1526 | B89_contig_1526_2633 | 3110856 | 3113198 | - | GH20 |
| pfam | B89_contig_1526 | B89_contig_1526_2634 | 3113444 | 3114652 | + | ROK | HTH_24 |
| TC | B89_contig_1526 | B89_contig_1526_2635 | 3114756 | 3116213 | - | 2.A.35.1.6 |
Gene ID: B89_contig_1526_2624
Type: CAZyme
Location: 3095062 - 3097632 (-)
Type: CAZyme
Location: 3095062 - 3097632 (-)
Gene ID: B89_contig_1526_2625
Type: pfam
Location: 3097761 - 3099164 (-)
Type: pfam
Location: 3097761 - 3099164 (-)
Gene ID: B89_contig_1526_2626
Type: pfam
Location: 3099332 - 3100795 (-)
Type: pfam
Location: 3099332 - 3100795 (-)
Gene ID: B89_contig_1526_2627
Type: TC
Location: 3100810 - 3102225 (-)
Type: TC
Location: 3100810 - 3102225 (-)
Gene ID: B89_contig_1526_2628
Type: pfam
Location: 3102241 - 3103347 (-)
Type: pfam
Location: 3102241 - 3103347 (-)
Gene ID: B89_contig_1526_2629
Type:
Location: 3103375 - 3104400 (-)
Type:
Location: 3103375 - 3104400 (-)
Gene ID: B89_contig_1526_2630
Type: TC
Location: 3104538 - 3106178 (-)
Type: TC
Location: 3104538 - 3106178 (-)
Gene ID: B89_contig_1526_2631
Type: TC
Location: 3106189 - 3109332 (-)
Type: TC
Location: 3106189 - 3109332 (-)
Gene ID: B89_contig_1526_2632
Type: pfam
Location: 3109374 - 3110540 (-)
Type: pfam
Location: 3109374 - 3110540 (-)
Gene ID: B89_contig_1526_2633
Type: CAZyme
Location: 3110856 - 3113198 (-)
Type: CAZyme
Location: 3110856 - 3113198 (-)
Gene ID: B89_contig_1526_2634
Type: pfam
Location: 3113444 - 3114652 (+)
Type: pfam
Location: 3113444 - 3114652 (+)
Gene ID: B89_contig_1526_2635
Type: TC
Location: 3114756 - 3116213 (-)
Type: TC
Location: 3114756 - 3116213 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_2625 | vegetarian > omnivore | 1.44876 | 0.03453 |
| B89_contig_1526_2626 | vegetarian > omnivore | 1.46171 | 0.03453 |
| B89_contig_1526_2626 | vegetarian > vegan | 1.02476 | 0.03476 |
| B89_contig_1526_2627 | vegetarian > omnivore | 1.46855 | 0.03453 |
| B89_contig_1526_2629 | vegetarian > omnivore | 1.75721 | 0.03453 |
| B89_contig_1526_2630 | vegetarian > omnivore | 1.95285 | 0.02563 |
| B89_contig_1526_2631 | vegetarian > omnivore | 1.99298 | 0.01448 |
| B89_contig_1526_2631 | vegetarian > vegan | 1.06173 | 0.03476 |
| B89_contig_1526_2632 | vegetarian > omnivore | 1.58748 | 0.03453 |
| B89_contig_1526_2634 | vegetarian > omnivore | 1.68106 | 0.03326 |
| B89_contig_1526_2634 | vegetarian > vegan | 1.06913 | 0.03476 |