Cluster: B89.bin_3_CGC49
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 10
- Substrate:
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_04401
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B89_contig_1526 | B89_contig_1526_2287 | 2670961 | 2672274 | + | CE7 |
| TC | B89_contig_1526 | B89_contig_1526_2288 | 2672616 | 2674094 | - | 2.A.1.14.25 |
| pfam | B89_contig_1526 | B89_contig_1526_2289 | 2674298 | 2675221 | - | KduI |
| TC | B89_contig_1526 | B89_contig_1526_2290 | 2675269 | 2676654 | - | 4.A.5.1.3 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2291 | 2676916 | 2679018 | + | CE8 | GH105 |
| TC | B89_contig_1526 | B89_contig_1526_2292 | 2679121 | 2682369 | + | 1.B.14.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_2293 | 2682390 | 2684345 | + | SusD_RagB | SusD-like_3 |
| pfam | B89_contig_1526 | B89_contig_1526_2294 | 2684375 | 2686015 | + | DUF5123 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2295 | 2686161 | 2687675 | + | PL1_2 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2296 | 2687685 | 2689163 | + | PL1_2 |
| STP | B89_contig_1526 | B89_contig_1526_2297 | 2689313 | 2689771 | - | AraC_binding |
| CAZyme | B89_contig_1526 | B89_contig_1526_2298 | 2689928 | 2691547 | + | PL10_2 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2299 | 2691725 | 2693926 | + | CE19 | PL10_1 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2300 | 2693934 | 2695658 | + | CE12 | CE8 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_2301 | 2695691 | 2695963 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | B89_contig_1526 | B89_contig_1526_2302 | 2695847 | 2697103 | - | TonB_C |
| TC | B89_contig_1526 | B89_contig_1526_2303 | 2697276 | 2698874 | + | 2.A.81.1.2 |
| TF | B89_contig_1526 | B89_contig_1526_2304 | 2698940 | 2699845 | - | HTH_AraC |
| pfam | B89_contig_1526 | B89_contig_1526_2305 | 2700104 | 2700913 | - | Aldolase_II |
| TC | B89_contig_1526 | B89_contig_1526_2306 | 2700952 | 2701983 | - | 2.A.7.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_2307 | 2702081 | 2703334 | - | RhaA |
| pfam | B89_contig_1526 | B89_contig_1526_2308 | 2703363 | 2704823 | - | FGGY_N | FGGY_C |
| CAZyme | B89_contig_1526 | B89_contig_1526_2309 | 2705174 | 2706556 | + | GH175 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2310 | 2706586 | 2708775 | + | GH78 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2311 | 2708846 | 2710252 | + | GH140 |
| pfam | B89_contig_1526 | B89_contig_1526_2312 | 2710469 | 2710837 | - | 4HBT | FlK |
| TC | B89_contig_1526 | B89_contig_1526_2313 | 2710851 | 2712095 | - | 1.A.23.4.5 |
Gene ID: B89_contig_1526_2287
Type: CAZyme
Location: 2670961 - 2672274 (+)
Type: CAZyme
Location: 2670961 - 2672274 (+)
Gene ID: B89_contig_1526_2288
Type: TC
Location: 2672616 - 2674094 (-)
Type: TC
Location: 2672616 - 2674094 (-)
Gene ID: B89_contig_1526_2289
Type: pfam
Location: 2674298 - 2675221 (-)
Type: pfam
Location: 2674298 - 2675221 (-)
Gene ID: B89_contig_1526_2290
Type: TC
Location: 2675269 - 2676654 (-)
Type: TC
Location: 2675269 - 2676654 (-)
Gene ID: B89_contig_1526_2291
Type: CAZyme
Location: 2676916 - 2679018 (+)
Type: CAZyme
Location: 2676916 - 2679018 (+)
Gene ID: B89_contig_1526_2292
Type: TC
Location: 2679121 - 2682369 (+)
Type: TC
Location: 2679121 - 2682369 (+)
Gene ID: B89_contig_1526_2293
Type: pfam
Location: 2682390 - 2684345 (+)
Type: pfam
Location: 2682390 - 2684345 (+)
Gene ID: B89_contig_1526_2294
Type: pfam
Location: 2684375 - 2686015 (+)
Type: pfam
Location: 2684375 - 2686015 (+)
Gene ID: B89_contig_1526_2295
Type: CAZyme
Location: 2686161 - 2687675 (+)
Type: CAZyme
Location: 2686161 - 2687675 (+)
Gene ID: B89_contig_1526_2296
Type: CAZyme
Location: 2687685 - 2689163 (+)
Type: CAZyme
Location: 2687685 - 2689163 (+)
Gene ID: B89_contig_1526_2297
Type: STP
Location: 2689313 - 2689771 (-)
Type: STP
Location: 2689313 - 2689771 (-)
Gene ID: B89_contig_1526_2298
Type: CAZyme
Location: 2689928 - 2691547 (+)
Type: CAZyme
Location: 2689928 - 2691547 (+)
Gene ID: B89_contig_1526_2299
Type: CAZyme
Location: 2691725 - 2693926 (+)
Type: CAZyme
Location: 2691725 - 2693926 (+)
Gene ID: B89_contig_1526_2300
Type: CAZyme
Location: 2693934 - 2695658 (+)
Type: CAZyme
Location: 2693934 - 2695658 (+)
Gene ID: B89_contig_1526_2301
Type:
Location: 2695691 - 2695963 (+)
Type:
Location: 2695691 - 2695963 (+)
Gene ID: B89_contig_1526_2302
Type: pfam
Location: 2695847 - 2697103 (-)
Type: pfam
Location: 2695847 - 2697103 (-)
Gene ID: B89_contig_1526_2303
Type: TC
Location: 2697276 - 2698874 (+)
Type: TC
Location: 2697276 - 2698874 (+)
Gene ID: B89_contig_1526_2304
Type: TF
Location: 2698940 - 2699845 (-)
Type: TF
Location: 2698940 - 2699845 (-)
Gene ID: B89_contig_1526_2305
Type: pfam
Location: 2700104 - 2700913 (-)
Type: pfam
Location: 2700104 - 2700913 (-)
Gene ID: B89_contig_1526_2306
Type: TC
Location: 2700952 - 2701983 (-)
Type: TC
Location: 2700952 - 2701983 (-)
Gene ID: B89_contig_1526_2307
Type: pfam
Location: 2702081 - 2703334 (-)
Type: pfam
Location: 2702081 - 2703334 (-)
Gene ID: B89_contig_1526_2308
Type: pfam
Location: 2703363 - 2704823 (-)
Type: pfam
Location: 2703363 - 2704823 (-)
Gene ID: B89_contig_1526_2309
Type: CAZyme
Location: 2705174 - 2706556 (+)
Type: CAZyme
Location: 2705174 - 2706556 (+)
Gene ID: B89_contig_1526_2310
Type: CAZyme
Location: 2706586 - 2708775 (+)
Type: CAZyme
Location: 2706586 - 2708775 (+)
Gene ID: B89_contig_1526_2311
Type: CAZyme
Location: 2708846 - 2710252 (+)
Type: CAZyme
Location: 2708846 - 2710252 (+)
Gene ID: B89_contig_1526_2312
Type: pfam
Location: 2710469 - 2710837 (-)
Type: pfam
Location: 2710469 - 2710837 (-)
Gene ID: B89_contig_1526_2313
Type: TC
Location: 2710851 - 2712095 (-)
Type: TC
Location: 2710851 - 2712095 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_2293 | vegetarian > omnivore | 1.03075 | 0.03453 |
| B89_contig_1526_2294 | vegetarian > omnivore | 1.28141 | 0.03453 |
| B89_contig_1526_2294 | vegetarian > vegan | 1.09535 | 0.03476 |
| B89_contig_1526_2295 | vegetarian > omnivore | 1.16057 | 0.03453 |
| B89_contig_1526_2297 | vegetarian > omnivore | 1.10864 | 0.03453 |
| B89_contig_1526_2297 | vegetarian > vegan | 1.08594 | 0.03476 |
| B89_contig_1526_2299 | vegetarian > vegan | 1.02525 | 0.03476 |