Cluster: B89.bin_3_CGC41
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate: pectin/host glycan
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_00110
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_1997 | 2287212 | 2290427 | + | 1.B.14.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_1998 | 2290456 | 2292318 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| sulfatase | B89_contig_1526 | B89_contig_1526_1999 | 2292618 | 2294195 | + | S1_11 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2000 | 2294208 | 2296544 | + | GH20 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2001 | 2296569 | 2299286 | + | GH16_3 | GH29 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2002 | 2299302 | 2302907 | + | GH2 |
| CAZyme | B89_contig_1526 | B89_contig_1526_2003 | 2303055 | 2304680 | + | CBM93 | GH33 |
| pfam | B89_contig_1526 | B89_contig_1526_2004 | 2304765 | 2305421 | - | Methyltransf_30 |
| TC | B89_contig_1526 | B89_contig_1526_2005 | 2305446 | 2305907 | - | 9.B.27.3.3 |
Gene ID: B89_contig_1526_1997
Type: TC
Location: 2287212 - 2290427 (+)
Type: TC
Location: 2287212 - 2290427 (+)
Gene ID: B89_contig_1526_1998
Type: pfam
Location: 2290456 - 2292318 (+)
Type: pfam
Location: 2290456 - 2292318 (+)
Gene ID: B89_contig_1526_1999
Type: sulfatase
Location: 2292618 - 2294195 (+)
Type: sulfatase
Location: 2292618 - 2294195 (+)
Gene ID: B89_contig_1526_2000
Type: CAZyme
Location: 2294208 - 2296544 (+)
Type: CAZyme
Location: 2294208 - 2296544 (+)
Gene ID: B89_contig_1526_2001
Type: CAZyme
Location: 2296569 - 2299286 (+)
Type: CAZyme
Location: 2296569 - 2299286 (+)
Gene ID: B89_contig_1526_2002
Type: CAZyme
Location: 2299302 - 2302907 (+)
Type: CAZyme
Location: 2299302 - 2302907 (+)
Gene ID: B89_contig_1526_2003
Type: CAZyme
Location: 2303055 - 2304680 (+)
Type: CAZyme
Location: 2303055 - 2304680 (+)
Gene ID: B89_contig_1526_2004
Type: pfam
Location: 2304765 - 2305421 (-)
Type: pfam
Location: 2304765 - 2305421 (-)
Gene ID: B89_contig_1526_2005
Type: TC
Location: 2305446 - 2305907 (-)
Type: TC
Location: 2305446 - 2305907 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_1997 | vegetarian > omnivore | 1.02085 | 0.03453 |
| B89_contig_1526_1998 | vegetarian > omnivore | 1.21548 | 0.03453 |
| B89_contig_1526_1998 | vegetarian > vegan | 1.00588 | 0.03476 |
| B89_contig_1526_2000 | vegetarian > omnivore | 1.25345 | 0.02575 |
| B89_contig_1526_2005 | vegetarian > omnivore | 1.93960 | 0.03453 |