Cluster: B89.bin_3_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: B89.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B89_contig_1526 | B89_contig_1526_1786 | 2001129 | 2002352 | - | GT30 |
| pfam | B89_contig_1526 | B89_contig_1526_1787 | 2002362 | 2003879 | - | tRNA-synt_1c | Anticodon_2 |
| STP | B89_contig_1526 | B89_contig_1526_1788 | 2003964 | 2006021 | + | HD |
| CAZyme | B89_contig_1526 | B89_contig_1526_1789 | 2006119 | 2007240 | + | PL10_1 |
| pfam | B89_contig_1526 | B89_contig_1526_1790 | 2007481 | 2007957 | - | LMWPc |
| pfam | B89_contig_1526 | B89_contig_1526_1791 | 2007954 | 2008670 | - | PHP |
| TC | B89_contig_1526 | B89_contig_1526_1792 | 2008682 | 2011144 | - | 3.A.11.3.1 |
Gene ID: B89_contig_1526_1786
Type: CAZyme
Location: 2001129 - 2002352 (-)
Type: CAZyme
Location: 2001129 - 2002352 (-)
Gene ID: B89_contig_1526_1787
Type: pfam
Location: 2002362 - 2003879 (-)
Type: pfam
Location: 2002362 - 2003879 (-)
Gene ID: B89_contig_1526_1788
Type: STP
Location: 2003964 - 2006021 (+)
Type: STP
Location: 2003964 - 2006021 (+)
Gene ID: B89_contig_1526_1789
Type: CAZyme
Location: 2006119 - 2007240 (+)
Type: CAZyme
Location: 2006119 - 2007240 (+)
Gene ID: B89_contig_1526_1790
Type: pfam
Location: 2007481 - 2007957 (-)
Type: pfam
Location: 2007481 - 2007957 (-)
Gene ID: B89_contig_1526_1791
Type: pfam
Location: 2007954 - 2008670 (-)
Type: pfam
Location: 2007954 - 2008670 (-)
Gene ID: B89_contig_1526_1792
Type: TC
Location: 2008682 - 2011144 (-)
Type: TC
Location: 2008682 - 2011144 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.