Cluster: B89.bin_3_CGC33
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_00275
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_1709 | 1926712 | 1927608 | + | 3.A.1.105.4 |
| TC | B89_contig_1526 | B89_contig_1526_1710 | 1927613 | 1929085 | + | 3.A.1.105.15 |
| TC | B89_contig_1526 | B89_contig_1526_1711 | 1929118 | 1930215 | + | 3.A.1.105.4 |
| TC | B89_contig_1526 | B89_contig_1526_1712 | 1930226 | 1931287 | + | 3.A.1.105.4 |
| pfam | B89_contig_1526 | B89_contig_1526_1713 | 1931380 | 1932552 | + | Fe-ADH | ADH_Fe_C |
| CAZyme | B89_contig_1526 | B89_contig_1526_1714 | 1932663 | 1934963 | - | GH3 |
| CAZyme | B89_contig_1526 | B89_contig_1526_1715 | 1934988 | 1936346 | - | GH144 |
| pfam | B89_contig_1526 | B89_contig_1526_1716 | 1936443 | 1937921 | - | SusD_RagB | SusD-like_3 |
| TC | B89_contig_1526 | B89_contig_1526_1717 | 1937945 | 1940980 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_1718 | 1941142 | 1943991 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B89_contig_1526 | B89_contig_1526_1719 | 1944144 | 1945877 | - | CBM32 | GH43_28 |
Gene ID: B89_contig_1526_1709
Type: TC
Location: 1926712 - 1927608 (+)
Type: TC
Location: 1926712 - 1927608 (+)
Gene ID: B89_contig_1526_1710
Type: TC
Location: 1927613 - 1929085 (+)
Type: TC
Location: 1927613 - 1929085 (+)
Gene ID: B89_contig_1526_1711
Type: TC
Location: 1929118 - 1930215 (+)
Type: TC
Location: 1929118 - 1930215 (+)
Gene ID: B89_contig_1526_1712
Type: TC
Location: 1930226 - 1931287 (+)
Type: TC
Location: 1930226 - 1931287 (+)
Gene ID: B89_contig_1526_1713
Type: pfam
Location: 1931380 - 1932552 (+)
Type: pfam
Location: 1931380 - 1932552 (+)
Gene ID: B89_contig_1526_1714
Type: CAZyme
Location: 1932663 - 1934963 (-)
Type: CAZyme
Location: 1932663 - 1934963 (-)
Gene ID: B89_contig_1526_1715
Type: CAZyme
Location: 1934988 - 1936346 (-)
Type: CAZyme
Location: 1934988 - 1936346 (-)
Gene ID: B89_contig_1526_1716
Type: pfam
Location: 1936443 - 1937921 (-)
Type: pfam
Location: 1936443 - 1937921 (-)
Gene ID: B89_contig_1526_1717
Type: TC
Location: 1937945 - 1940980 (-)
Type: TC
Location: 1937945 - 1940980 (-)
Gene ID: B89_contig_1526_1718
Type:
Location: 1941142 - 1943991 (-)
Type:
Location: 1941142 - 1943991 (-)
Gene ID: B89_contig_1526_1719
Type: CAZyme
Location: 1944144 - 1945877 (-)
Type: CAZyme
Location: 1944144 - 1945877 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_1715 | vegetarian > omnivore | 1.17025 | 0.03453 |