Cluster: B89.bin_3_CGC32
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate: pectin/alpha-glucan
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_00025
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_1683 | 1890395 | 1891585 | - | 2.A.1.2.97 |
| TF | B89_contig_1526 | B89_contig_1526_1684 | 1891735 | 1892586 | + | HTH_AraC |
| TC | B89_contig_1526 | B89_contig_1526_1685 | 1892591 | 1893844 | - | 2.A.1.2.97 |
| TF | B89_contig_1526 | B89_contig_1526_1686 | 1893997 | 1894842 | + | HTH_AraC |
| CAZyme | B89_contig_1526 | B89_contig_1526_1687 | 1894919 | 1897297 | - | GH13_10 |
| pfam | B89_contig_1526 | B89_contig_1526_1688 | 1897406 | 1898539 | - | SusE |
| TC | B89_contig_1526 | B89_contig_1526_1689 | 1898559 | 1900232 | - | 8.A.46.1.1 |
| TC | B89_contig_1526 | B89_contig_1526_1690 | 1900245 | 1903310 | - | 1.B.14.6.1 |
| CAZyme | B89_contig_1526 | B89_contig_1526_1691 | 1903475 | 1905706 | - | GH97 |
| CAZyme | B89_contig_1526 | B89_contig_1526_1692 | 1905814 | 1907667 | - | GH13_46 |
| pfam | B89_contig_1526 | B89_contig_1526_1693 | 1907882 | 1909498 | + | DUF6377 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_1694 | 1909611 | 1910357 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | B89_contig_1526 | B89_contig_1526_1695 | 1910451 | 1911782 | - | 2.A.115.2.14 |
| TF | B89_contig_1526 | B89_contig_1526_1696 | 1911879 | 1912736 | + | 0035607 |
| pfam | B89_contig_1526 | B89_contig_1526_1697 | 1913080 | 1914120 | + | NTP_transferase |
| TC | B89_contig_1526 | B89_contig_1526_1698 | 1914342 | 1916714 | - | 1.B.14.6.5 |
Gene ID: B89_contig_1526_1683
Type: TC
Location: 1890395 - 1891585 (-)
Type: TC
Location: 1890395 - 1891585 (-)
Gene ID: B89_contig_1526_1684
Type: TF
Location: 1891735 - 1892586 (+)
Type: TF
Location: 1891735 - 1892586 (+)
Gene ID: B89_contig_1526_1685
Type: TC
Location: 1892591 - 1893844 (-)
Type: TC
Location: 1892591 - 1893844 (-)
Gene ID: B89_contig_1526_1686
Type: TF
Location: 1893997 - 1894842 (+)
Type: TF
Location: 1893997 - 1894842 (+)
Gene ID: B89_contig_1526_1687
Type: CAZyme
Location: 1894919 - 1897297 (-)
Type: CAZyme
Location: 1894919 - 1897297 (-)
Gene ID: B89_contig_1526_1688
Type: pfam
Location: 1897406 - 1898539 (-)
Type: pfam
Location: 1897406 - 1898539 (-)
Gene ID: B89_contig_1526_1689
Type: TC
Location: 1898559 - 1900232 (-)
Type: TC
Location: 1898559 - 1900232 (-)
Gene ID: B89_contig_1526_1690
Type: TC
Location: 1900245 - 1903310 (-)
Type: TC
Location: 1900245 - 1903310 (-)
Gene ID: B89_contig_1526_1691
Type: CAZyme
Location: 1903475 - 1905706 (-)
Type: CAZyme
Location: 1903475 - 1905706 (-)
Gene ID: B89_contig_1526_1692
Type: CAZyme
Location: 1905814 - 1907667 (-)
Type: CAZyme
Location: 1905814 - 1907667 (-)
Gene ID: B89_contig_1526_1693
Type: pfam
Location: 1907882 - 1909498 (+)
Type: pfam
Location: 1907882 - 1909498 (+)
Gene ID: B89_contig_1526_1694
Type:
Location: 1909611 - 1910357 (-)
Type:
Location: 1909611 - 1910357 (-)
Gene ID: B89_contig_1526_1695
Type: TC
Location: 1910451 - 1911782 (-)
Type: TC
Location: 1910451 - 1911782 (-)
Gene ID: B89_contig_1526_1696
Type: TF
Location: 1911879 - 1912736 (+)
Type: TF
Location: 1911879 - 1912736 (+)
Gene ID: B89_contig_1526_1697
Type: pfam
Location: 1913080 - 1914120 (+)
Type: pfam
Location: 1913080 - 1914120 (+)
Gene ID: B89_contig_1526_1698
Type: TC
Location: 1914342 - 1916714 (-)
Type: TC
Location: 1914342 - 1916714 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_1686 | vegetarian > vegan | 1.15885 | 0.03476 |