Cluster: B89.bin_3_CGC18
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: B89.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | B89_contig_1526 | B89_contig_1526_951 | 1015843 | 1016676 | + | GH16_3 |
| TC | B89_contig_1526 | B89_contig_1526_952 | 1016694 | 1019888 | + | 1.B.14.6.2 |
| TC | B89_contig_1526 | B89_contig_1526_953 | 1019926 | 1021608 | + | 8.A.46.2.1 |
| NULL(UNKNOWN) | B89_contig_1526 | B89_contig_1526_954 | 1021634 | 1022890 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B89_contig_1526 | B89_contig_1526_955 | 1022907 | 1025234 | + | GH3 |
| pfam | B89_contig_1526 | B89_contig_1526_956 | 1025421 | 1026539 | - | DUF4852 |
| pfam | B89_contig_1526 | B89_contig_1526_957 | 1027029 | 1029653 | + | DUF4953 | DUF5117 | DUF5118 |
| TC | B89_contig_1526 | B89_contig_1526_958 | 1029728 | 1032997 | + | 1.B.14.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_959 | 1033011 | 1034345 | + | SusD_RagB | SusD-like_3 |
| TC | B89_contig_1526 | B89_contig_1526_960 | 1034414 | 1035415 | - | 2.A.4.7.7 |
| TC | B89_contig_1526 | B89_contig_1526_961 | 1035713 | 1036873 | - | 3.B.1.1.2 |
| pfam | B89_contig_1526 | B89_contig_1526_962 | 1036875 | 1037303 | - | Biotin_lipoyl | Biotin_lipoyl_2 |
| pfam | B89_contig_1526 | B89_contig_1526_963 | 1037326 | 1038255 | - | LTD | OAD_gamma |
| TC | B89_contig_1526 | B89_contig_1526_964 | 1038298 | 1039851 | - | 3.B.1.1.2 |
Gene ID: B89_contig_1526_951
Type: CAZyme
Location: 1015843 - 1016676 (+)
Type: CAZyme
Location: 1015843 - 1016676 (+)
Gene ID: B89_contig_1526_952
Type: TC
Location: 1016694 - 1019888 (+)
Type: TC
Location: 1016694 - 1019888 (+)
Gene ID: B89_contig_1526_953
Type: TC
Location: 1019926 - 1021608 (+)
Type: TC
Location: 1019926 - 1021608 (+)
Gene ID: B89_contig_1526_954
Type:
Location: 1021634 - 1022890 (+)
Type:
Location: 1021634 - 1022890 (+)
Gene ID: B89_contig_1526_955
Type: CAZyme
Location: 1022907 - 1025234 (+)
Type: CAZyme
Location: 1022907 - 1025234 (+)
Gene ID: B89_contig_1526_956
Type: pfam
Location: 1025421 - 1026539 (-)
Type: pfam
Location: 1025421 - 1026539 (-)
Gene ID: B89_contig_1526_957
Type: pfam
Location: 1027029 - 1029653 (+)
Type: pfam
Location: 1027029 - 1029653 (+)
Gene ID: B89_contig_1526_958
Type: TC
Location: 1029728 - 1032997 (+)
Type: TC
Location: 1029728 - 1032997 (+)
Gene ID: B89_contig_1526_959
Type: pfam
Location: 1033011 - 1034345 (+)
Type: pfam
Location: 1033011 - 1034345 (+)
Gene ID: B89_contig_1526_960
Type: TC
Location: 1034414 - 1035415 (-)
Type: TC
Location: 1034414 - 1035415 (-)
Gene ID: B89_contig_1526_961
Type: TC
Location: 1035713 - 1036873 (-)
Type: TC
Location: 1035713 - 1036873 (-)
Gene ID: B89_contig_1526_962
Type: pfam
Location: 1036875 - 1037303 (-)
Type: pfam
Location: 1036875 - 1037303 (-)
Gene ID: B89_contig_1526_963
Type: pfam
Location: 1037326 - 1038255 (-)
Type: pfam
Location: 1037326 - 1038255 (-)
Gene ID: B89_contig_1526_964
Type: TC
Location: 1038298 - 1039851 (-)
Type: TC
Location: 1038298 - 1039851 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.