Cluster: B89.bin_3_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: B89.bin_3
- CGC Family ID: CGCFAM_00754
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B89_contig_1526 | B89_contig_1526_613 | 622896 | 626231 | - | 1.B.14.6.1 |
| pfam | B89_contig_1526 | B89_contig_1526_614 | 626382 | 627362 | - | HTH_38 |
| CAZyme | B89_contig_1526 | B89_contig_1526_615 | 627585 | 628937 | - | GH5_7 |
| CAZyme | B89_contig_1526 | B89_contig_1526_616 | 629178 | 630146 | - | GH5_2 |
| TF | B89_contig_1526 | B89_contig_1526_617 | 630400 | 631290 | - | HTH_AraC |
| CAZyme | B89_contig_1526 | B89_contig_1526_618 | 631625 | 633832 | + | GH36 |
| CAZyme | B89_contig_1526 | B89_contig_1526_619 | 634209 | 635633 | - | CE20 |
| CAZyme | B89_contig_1526 | B89_contig_1526_620 | 635663 | 636769 | - | CE2 |
| TC | B89_contig_1526 | B89_contig_1526_621 | 637112 | 638467 | + | 2.A.66.1.28 |
Gene ID: B89_contig_1526_613
Type: TC
Location: 622896 - 626231 (-)
Type: TC
Location: 622896 - 626231 (-)
Gene ID: B89_contig_1526_614
Type: pfam
Location: 626382 - 627362 (-)
Type: pfam
Location: 626382 - 627362 (-)
Gene ID: B89_contig_1526_615
Type: CAZyme
Location: 627585 - 628937 (-)
Type: CAZyme
Location: 627585 - 628937 (-)
Gene ID: B89_contig_1526_616
Type: CAZyme
Location: 629178 - 630146 (-)
Type: CAZyme
Location: 629178 - 630146 (-)
Gene ID: B89_contig_1526_617
Type: TF
Location: 630400 - 631290 (-)
Type: TF
Location: 630400 - 631290 (-)
Gene ID: B89_contig_1526_618
Type: CAZyme
Location: 631625 - 633832 (+)
Type: CAZyme
Location: 631625 - 633832 (+)
Gene ID: B89_contig_1526_619
Type: CAZyme
Location: 634209 - 635633 (-)
Type: CAZyme
Location: 634209 - 635633 (-)
Gene ID: B89_contig_1526_620
Type: CAZyme
Location: 635663 - 636769 (-)
Type: CAZyme
Location: 635663 - 636769 (-)
Gene ID: B89_contig_1526_621
Type: TC
Location: 637112 - 638467 (+)
Type: TC
Location: 637112 - 638467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000436795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B89_contig_1526_614 | vegetarian > omnivore | 1.52872 | 0.01448 |
| B89_contig_1526_620 | vegan > omnivore | 2.06852 | 0.03459 |
| B89_contig_1526_620 | vegetarian > omnivore | 1.77370 | 0.00932 |