Cluster: B50.bin_27_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: alpha-glucan
- Genome ID: B50.bin_27
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B50_contig_4814 | B50_contig_4814_119 | 124642 | 126312 | - | 3.A.1.203.11 |
| peptidase | B50_contig_4814 | B50_contig_4814_120 | 126363 | 129110 | - | M16.UPB |
| TC | B50_contig_4814 | B50_contig_4814_121 | 129344 | 131368 | - | 1.B.14.2.14 |
| peptidase | B50_contig_4814 | B50_contig_4814_122 | 131531 | 132583 | - | S49.UNA |
| CAZyme | B50_contig_4814 | B50_contig_4814_123 | 132618 | 133805 | - | GT19 |
| CAZyme | B50_contig_4814 | B50_contig_4814_124 | 134105 | 136294 | + | CBM48 | GH13_9 |
| CAZyme | B50_contig_4814 | B50_contig_4814_125 | 136337 | 138337 | + | GH13_11 |
| pfam | B50_contig_4814 | B50_contig_4814_126 | 138355 | 139650 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | B50_contig_4814 | B50_contig_4814_127 | 139698 | 141128 | + | GT5 |
| CAZyme | B50_contig_4814 | B50_contig_4814_128 | 141290 | 143755 | + | GT35 |
| TC | B50_contig_4814 | B50_contig_4814_129 | 143849 | 145702 | - | 3.A.1.106.2 |
Gene ID: B50_contig_4814_119
Type: TC
Location: 124642 - 126312 (-)
Type: TC
Location: 124642 - 126312 (-)
Gene ID: B50_contig_4814_120
Type: peptidase
Location: 126363 - 129110 (-)
Type: peptidase
Location: 126363 - 129110 (-)
Gene ID: B50_contig_4814_121
Type: TC
Location: 129344 - 131368 (-)
Type: TC
Location: 129344 - 131368 (-)
Gene ID: B50_contig_4814_122
Type: peptidase
Location: 131531 - 132583 (-)
Type: peptidase
Location: 131531 - 132583 (-)
Gene ID: B50_contig_4814_123
Type: CAZyme
Location: 132618 - 133805 (-)
Type: CAZyme
Location: 132618 - 133805 (-)
Gene ID: B50_contig_4814_124
Type: CAZyme
Location: 134105 - 136294 (+)
Type: CAZyme
Location: 134105 - 136294 (+)
Gene ID: B50_contig_4814_125
Type: CAZyme
Location: 136337 - 138337 (+)
Type: CAZyme
Location: 136337 - 138337 (+)
Gene ID: B50_contig_4814_126
Type: pfam
Location: 138355 - 139650 (+)
Type: pfam
Location: 138355 - 139650 (+)
Gene ID: B50_contig_4814_127
Type: CAZyme
Location: 139698 - 141128 (+)
Type: CAZyme
Location: 139698 - 141128 (+)
Gene ID: B50_contig_4814_128
Type: CAZyme
Location: 141290 - 143755 (+)
Type: CAZyme
Location: 141290 - 143755 (+)
Gene ID: B50_contig_4814_129
Type: TC
Location: 143849 - 145702 (-)
Type: TC
Location: 143849 - 145702 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_A
Species
Haemophilus_A sputorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.