Cluster: B50.bin_27_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: B50.bin_27
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_20 | 20900 | 22318 | - | 9.B.18.1.2 |
| pfam | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_21 | 22403 | 23470 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_22 | 23482 | 24255 | - | GT111 |
| CAZyme | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_23 | 24257 | 25183 | - | GT2 |
| pfam | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_24 | 25258 | 26406 | - | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_25 | 26420 | 28174 | - | GT2 |
| TC | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_26 | 28223 | 28954 | - | 3.A.1.103.1 |
| TC | B50_contig_1650_corr_26_np12 | B50_contig_1650_corr_26_np12_27 | 28954 | 29742 | - | 3.A.1.103.4 |
Gene ID: B50_contig_1650_corr_26_np12_20
Type: TC
Location: 20900 - 22318 (-)
Type: TC
Location: 20900 - 22318 (-)
Gene ID: B50_contig_1650_corr_26_np12_21
Type: pfam
Location: 22403 - 23470 (-)
Type: pfam
Location: 22403 - 23470 (-)
Gene ID: B50_contig_1650_corr_26_np12_22
Type: CAZyme
Location: 23482 - 24255 (-)
Type: CAZyme
Location: 23482 - 24255 (-)
Gene ID: B50_contig_1650_corr_26_np12_23
Type: CAZyme
Location: 24257 - 25183 (-)
Type: CAZyme
Location: 24257 - 25183 (-)
Gene ID: B50_contig_1650_corr_26_np12_24
Type: pfam
Location: 25258 - 26406 (-)
Type: pfam
Location: 25258 - 26406 (-)
Gene ID: B50_contig_1650_corr_26_np12_25
Type: CAZyme
Location: 26420 - 28174 (-)
Type: CAZyme
Location: 26420 - 28174 (-)
Gene ID: B50_contig_1650_corr_26_np12_26
Type: TC
Location: 28223 - 28954 (-)
Type: TC
Location: 28223 - 28954 (-)
Gene ID: B50_contig_1650_corr_26_np12_27
Type: TC
Location: 28954 - 29742 (-)
Type: TC
Location: 28954 - 29742 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_A
Species
Haemophilus_A sputorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.