Cluster: B38.bin_6_CGC52
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: B38.bin_6
- CGC Family ID: CGCFAM_07487
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B38_contig_1193 | B38_contig_1193_2991 | 3772141 | 3773727 | + | 3.A.2.1.3 |
| TC | B38_contig_1193 | B38_contig_1193_2992 | 3773734 | 3774603 | + | 3.A.2.1.5 |
| NULL(UNKNOWN) | B38_contig_1193 | B38_contig_1193_2993 | 3774891 | 3775331 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B38_contig_1193 | B38_contig_1193_2994 | 3775539 | 3777050 | - | GH30_2 |
| pfam | B38_contig_1193 | B38_contig_1193_2995 | 3777179 | 3778471 | - | SDH_alpha |
| NULL(UNKNOWN) | B38_contig_1193 | B38_contig_1193_2996 | 3778498 | 3779259 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B38_contig_1193 | B38_contig_1193_2997 | 3779403 | 3782840 | + | CBM61 |
Gene ID: B38_contig_1193_2991
Type: TC
Location: 3772141 - 3773727 (+)
Type: TC
Location: 3772141 - 3773727 (+)
Gene ID: B38_contig_1193_2992
Type: TC
Location: 3773734 - 3774603 (+)
Type: TC
Location: 3773734 - 3774603 (+)
Gene ID: B38_contig_1193_2993
Type:
Location: 3774891 - 3775331 (-)
Type:
Location: 3774891 - 3775331 (-)
Gene ID: B38_contig_1193_2994
Type: CAZyme
Location: 3775539 - 3777050 (-)
Type: CAZyme
Location: 3775539 - 3777050 (-)
Gene ID: B38_contig_1193_2995
Type: pfam
Location: 3777179 - 3778471 (-)
Type: pfam
Location: 3777179 - 3778471 (-)
Gene ID: B38_contig_1193_2996
Type:
Location: 3778498 - 3779259 (-)
Type:
Location: 3778498 - 3779259 (-)
Gene ID: B38_contig_1193_2997
Type: CAZyme
Location: 3779403 - 3782840 (+)
Type: CAZyme
Location: 3779403 - 3782840 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella xylaniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| B38_contig_1193_2992 | vegan > omnivore | 1.11195 | 0.01269 |
| B38_contig_1193_2992 | vegetarian > omnivore | 1.38650 | 0.00672 |
| B38_contig_1193_2993 | vegan > omnivore | 1.21712 | 0.01269 |
| B38_contig_1193_2993 | vegetarian > omnivore | 1.19106 | 0.00672 |
| B38_contig_1193_2994 | vegetarian > omnivore | 1.23491 | 0.00672 |
| B38_contig_1193_2994 | vegan > omnivore | 1.01870 | 0.01269 |
| B38_contig_1193_2996 | vegetarian > omnivore | 1.10760 | 0.00672 |
| B38_contig_1193_2996 | vegan > omnivore | 1.26959 | 0.00958 |
| B38_contig_1193_2997 | vegetarian > omnivore | 1.01973 | 0.00672 |
| B38_contig_1193_2997 | vegan > omnivore | 1.08986 | 0.01269 |